Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01388 ATGTCCTTTCAACACATTCATAGGCGTGGTAGTGATGCTGAAGGAATACACTTCTACCAGATTATTCAACTTCCTCAGTTGCAAGATCAACAACTAATGATACCAAGGAATTTTGTAGAGAGATATTGGAAGGATGTATCAAATCCAATAACCCTTAAATTTCCAAACGGGTCTGATTGCAAAATGTATTGGGTACAACAAGGTGACAATATTTGGCTTCAGAATTGGAAAATGTTTGCACGGTCGCTTAGATGCGGAGAGCTTTTAGTTTTTCAATATAAAGGAGGATCAGATTTTCATGTCATTATATTTGATGATAGTAAACTCGAAATTGACTATTCAAGTATGAGGTACAATGATGACCAAGACGAAGAAGAGCGTGAAATTACTGATCAACCCCTCAAGAAACAGAAAATCAACTCAAATGATATTGCTACTGCTGCTACACCTCAAGGGACAAACATTGACAAGAATGGAACCCAGCAAAATGGTTTTGCAGAGACTAATAGAAACAGAGAAGGCAGGGATGCGAAAGCGGAGAAATGCACAAAAACTAAAGATGCAAATAAGAGAAGCTACACTAACTCTCATCCCGACGAGAATCCGAATTTCACTCTCAAATTATCGCGATCTAATGTGGAAGGTGATGTATCATTGAACATACCTACTCAATTTTCGAAAGAATACAAGAATGAGTTGTTGCAAGGGAGTGCAGCGATTAGAAGTGCTGGTGAGGATAGGACATGGCATGTGACAATAAGATGGCATAAAAGAGATGAAAATTTTAGAATAAGAGGTGGTTGGAAGTCATTTTCACAGGAACATAACTTGCAAGTTGATGATGTCTGTAAATTTGAGATGACTCAACAAGAACCACTTTCATTCACAATTACTATTAATCAATCTACAAAGGAACCATGCCCGAAGCAGTTTCAAGAAAACCAACGAGTCCAAGAAAGATCAGAGACAACACTGTCGCCGGTAGATGATATGGAATATTTGGGCAATTATGGAGAAGGAATTTCAAGGAGCTGTCCAGAAACAGATGGTCTTAAGCATTCTGAAACTCCGAATTTACAAAATAACTTCGAGGTTTCTGTAACATCATTATTCATGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAAGTTCAGTCGAGTTGAAAGTGGGGGAAGAAACATGGTCTATAGAGGTGAGTTATAATCAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTCGTGAGAGAATGCAAAGTAAAGATTGGAGACACTCTTTTGTTTAAGATTATTGATTTGCAAAATCATGTGTTCAAGGTTTCGATTGTCCTAGATGTTTAG 1365 0.378 MSFQHIHRRGSDAEGIHFYQIIQLPQLQDQQLMIPRNFVERYWKDVSNPITLKFPNGSDCKMYWVQQGDNIWLQNWKMFARSLRCGELLVFQYKGGSDFHVIIFDDSKLEIDYSSMRYNDDQDEEEREITDQPLKKQKINSNDIATAATPQGTNIDKNGTQQNGFAETNRNREGRDAKAEKCTKTKDANKRSYTNSHPDENPNFTLKLSRSNVEGDVSLNIPTQFSKEYKNELLQGSAAIRSAGEDRTWHVTIRWHKRDENFRIRGGWKSFSQEHNLQVDDVCKFEMTQQEPLSFTITINQSTKEPCPKQFQENQRVQERSETTLSPVDDMEYLGNYGEGISRSCPETDGLKHSETPNLQNNFEVSVTSLFMLVIPSEFLKRHNISSGSSVELKVGEETWSIEVSYNQHLDYGWFTKGWPEFVRECKVKIGDTLLFKIIDLQNHVFKVSIVLDV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01388 454 SMART B3_2 363 454 IPR003340 GO:0003677
Trre1g01388 454 SMART B3_2 18 107 IPR003340 GO:0003677
Trre1g01388 454 SMART B3_2 204 303 IPR003340 GO:0003677
Trre1g01388 454 ProSiteProfiles B3 DNA-binding domain profile. 204 303 IPR003340 GO:0003677
Trre1g01388 454 CDD B3_DNA 33 105 IPR003340 GO:0003677
Trre1g01388 454 CDD B3_DNA 202 299 IPR003340 GO:0003677
Trre1g01388 454 ProSiteProfiles B3 DNA-binding domain profile. 358 454 IPR003340 GO:0003677
Trre1g01388 454 SUPERFAMILY DNA-binding pseudobarrel domain 199 297 IPR015300 -
Trre1g01388 454 SUPERFAMILY DNA-binding pseudobarrel domain 17 106 IPR015300 -
Trre1g01388 454 MobiDBLite consensus disorder prediction 119 134 - -
Trre1g01388 454 MobiDBLite consensus disorder prediction 135 168 - -
Trre1g01388 454 SUPERFAMILY DNA-binding pseudobarrel domain 366 449 IPR015300 -
Trre1g01388 454 Pfam B3 DNA binding domain 204 299 IPR003340 GO:0003677
Trre1g01388 454 Pfam B3 DNA binding domain 365 442 IPR003340 GO:0003677
Trre1g01388 454 Gene3D - 11 108 IPR015300 -
Trre1g01388 454 CDD B3_DNA 366 450 IPR003340 GO:0003677
Trre1g01388 454 MobiDBLite consensus disorder prediction 169 194 - -
Trre1g01388 454 PANTHER B3 DOMAIN-CONTAINING 364 451 - -
Trre1g01388 454 Gene3D - 352 453 IPR015300 -
Trre1g01388 454 Gene3D - 180 303 IPR015300 -
Trre1g01388 454 MobiDBLite consensus disorder prediction 119 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01388 Trre-Chr1 10454914 10459320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01388 18 298 B3 DNA Binding Superfamily AT3G18990 24.925 1.34e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01388 B3 3.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01388 - - tpra:123913547 620.542