Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01387 ATGATATATGTGGACAATTATGGTGAAGGAATTTCAAGGAGCTGCCGAAAAACACATGGTCTTAAGAATTCTGAAACTCCAAATTTACATAATAAATTCAAGGTTTCTGTAATATCATTATTCATGCTGAAAATACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAAGTTCAGTCGAGTTGAAAATAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTTTAAACAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTAAAGATTGGAGACATGTGTTTGTTTGAGATTATTGATTTGCAAAATCACGTTTTCAAGGTTTCAATTATCCTAGATGTTTAG 375 0.3387 MIYVDNYGEGISRSCRKTHGLKNSETPNLHNKFKVSVISLFMLKIPSEFLKRHNISSGSSVELKIGEGTWFVEVSFKQHLDYGWFTKGWPEFVRECKVKIGDMCLFEIIDLQNHVFKVSIILDV 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01387 124 PANTHER B3 DOMAIN-CONTAINING 26 121 - -
Trre1g01387 124 ProSiteProfiles B3 DNA-binding domain profile. 28 124 IPR003340 GO:0003677
Trre1g01387 124 Gene3D - 11 123 IPR015300 -
Trre1g01387 124 CDD B3_DNA 36 121 IPR003340 GO:0003677
Trre1g01387 124 Pfam B3 DNA binding domain 34 114 IPR003340 GO:0003677
Trre1g01387 124 SUPERFAMILY DNA-binding pseudobarrel domain 26 121 IPR015300 -
Trre1g01387 124 SMART B3_2 33 119 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01387 Trre-Chr1 10450212 10452446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01387 42 121 REM Transcription Factor Family AT1G49480 27.500 1.49e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01387 B3 1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01387 - - tpra:123913547 211.075