Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01386 ATGGGTAAGAATGTTAAGAAATGCAGTAAAACTAAAGATGGGAATGAGAGAAACGGAAAATATTCTAATCCCAATGAGAATCCCAGTTTCACTCTCACATTACCGCGATCTTATGTTGAAGGTCGTAAAATAAGGCTGAGGATACCTACTCAGTTTTCGAAAGATTACATGAATGAGTTGTTGCAAATGAACGCAACGATTAGAAGTGTTGGTGAGGACAGGACATGGTCCGTGAAGTTAAACTTGCAAGTTAGACATGGTCATGAACCCAGGAGACATTTTGAAATGTCAACCGGTTGGAAGTTATTTTCACAAGAACATAACTTGCAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACGATTACTATTACTCCATCTACAAAGGAACCATGCACGGAGCAGTTTCGAGATTCCGATACTCCAAATTTACATAATAAATTCAAGGTTTCTGTAACATCATTATTCATGCTGAAAGTACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAAATTCAGTCGAGTTGAAAGTAGGGGATGGAACATGGTGTGTAGAGGTGAGTTTTAAACAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTAAAGATTGGAGACGCTTGTTTGTTTGAGATTATTGATTTGCAAAATCATGTTTTCAAGGTTTCAATTATCCTAGATGTTTAG 741 0.3711 MGKNVKKCSKTKDGNERNGKYSNPNENPSFTLTLPRSYVEGRKIRLRIPTQFSKDYMNELLQMNATIRSVGEDRTWSVKLNLQVRHGHEPRRHFEMSTGWKLFSQEHNLQVGDVCKFEMTQREPLSFTITITPSTKEPCTEQFRDSDTPNLHNKFKVSVTSLFMLKVPSEFLKRHNISSGNSVELKVGDGTWCVEVSFKQHLDYGWFTKGWPEFVRECKVKIGDACLFEIIDLQNHVFKVSIILDV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01386 246 CDD B3_DNA 28 131 IPR003340 GO:0003677
Trre1g01386 246 ProSiteProfiles B3 DNA-binding domain profile. 31 135 IPR003340 GO:0003677
Trre1g01386 246 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g01386 246 SUPERFAMILY DNA-binding pseudobarrel domain 154 243 IPR015300 -
Trre1g01386 246 CDD B3_DNA 158 243 IPR003340 GO:0003677
Trre1g01386 246 MobiDBLite consensus disorder prediction 1 19 - -
Trre1g01386 246 ProSiteProfiles B3 DNA-binding domain profile. 150 246 IPR003340 GO:0003677
Trre1g01386 246 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 25 138 IPR044837 -
Trre1g01386 246 Gene3D - 150 245 IPR015300 -
Trre1g01386 246 Gene3D - 9 137 IPR015300 -
Trre1g01386 246 SMART B3_2 30 135 IPR003340 GO:0003677
Trre1g01386 246 SMART B3_2 155 241 IPR003340 GO:0003677
Trre1g01386 246 Pfam B3 DNA binding domain 37 131 IPR003340 GO:0003677
Trre1g01386 246 Pfam B3 DNA binding domain 156 236 IPR003340 GO:0003677
Trre1g01386 246 SUPERFAMILY DNA-binding pseudobarrel domain 25 130 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01386 Trre-Chr1 10444230 10446175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01386 41 231 REM Transcription Factor Family AT4G31690 26.339 5.00e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01386 B3 8.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01386 - - tpra:123913547 380.948