Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01385 ATGGGTAAGAATGTTAAGAAATGCAGTAAAACTAAAGATGGGAATGAGAGAAACGGAAAATATTCTAATCCCAATGAGAATCCCAGTTTCACTCTCACATTACCGCGATCTTATGTTGAAGGTCGTAAAATAAGGCTGAGGATACCTACTCAGTTTTCGAAAGATTACATGAATGAGTTGTTGCAAATGAACGCAACGATTAGAAGTGTTGGTGAGGACAGGACATGGTCCGTGAAGTTAAACTTGCAAGTTAGACATGGTCATGAACCCAGGAGACATTTTGAAATGTCAACCGGTTGGAAGTTATTTTCACAAGAACATAACTTGCAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACGATTACTATTACTCCATCTACAAAGGAACCATGCACGGAGCAGTTTCGAGAAAACCAAGGAGTCCACGAAAAATCAGAGACAACTCCGGTAAAAAATATGGAATATGTGGGCAACTTTGAAGAAGGAATTTTAAGGAGCTGCTCAAAAGCATATGATTCCGATACTCCAAATTTACATAATAAATTCAAGGTTTCTGTAACATCATTATTCATGCTGAAAGTACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAAATTCAGTCGAGTTGAAAGTAGGGGATGGAACATGGTGTGTAGAGGTGAGTTTTAAACAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTAAAGATTGGAGACGCTTGTTTGTTTGAGATTATTGATTTGCAAAATCATGTTTTCAAGGTTTCAATTATCCTAGATGTTTAG 846 0.3723 MGKNVKKCSKTKDGNERNGKYSNPNENPSFTLTLPRSYVEGRKIRLRIPTQFSKDYMNELLQMNATIRSVGEDRTWSVKLNLQVRHGHEPRRHFEMSTGWKLFSQEHNLQVGDVCKFEMTQREPLSFTITITPSTKEPCTEQFRENQGVHEKSETTPVKNMEYVGNFEEGILRSCSKAYDSDTPNLHNKFKVSVTSLFMLKVPSEFLKRHNISSGNSVELKVGDGTWCVEVSFKQHLDYGWFTKGWPEFVRECKVKIGDACLFEIIDLQNHVFKVSIILDV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01385 281 CDD B3_DNA 28 131 IPR003340 GO:0003677
Trre1g01385 281 SUPERFAMILY DNA-binding pseudobarrel domain 181 278 IPR015300 -
Trre1g01385 281 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 25 138 IPR044837 -
Trre1g01385 281 ProSiteProfiles B3 DNA-binding domain profile. 185 281 IPR003340 GO:0003677
Trre1g01385 281 SMART B3_2 190 276 IPR003340 GO:0003677
Trre1g01385 281 SMART B3_2 30 135 IPR003340 GO:0003677
Trre1g01385 281 CDD B3_DNA 193 278 IPR003340 GO:0003677
Trre1g01385 281 ProSiteProfiles B3 DNA-binding domain profile. 31 135 IPR003340 GO:0003677
Trre1g01385 281 SUPERFAMILY DNA-binding pseudobarrel domain 25 130 IPR015300 -
Trre1g01385 281 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g01385 281 Gene3D - 173 280 IPR015300 -
Trre1g01385 281 Gene3D - 9 135 IPR015300 -
Trre1g01385 281 Pfam B3 DNA binding domain 37 131 IPR003340 GO:0003677
Trre1g01385 281 Pfam B3 DNA binding domain 191 271 IPR003340 GO:0003677
Trre1g01385 281 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01385 Trre-Chr1 10444230 10446175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01385 26 266 REM Transcription Factor Family AT4G31640 24.206 3.90e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01385 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01385 - - tpra:123913547 434.106