Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01384 ATGGGTAAGAATGTTAAGAAATGCAGTAAAACTAAAGATGGGAATGAGAGAAACGGAAAATATTCTAATCCCAATGAGAATCCCAGTTTCACTCTCACATTACCGCGATCTTATGTTGAAGGTCGTAAAATAAGGCTGAGGATACCTACTCAGTTTTCGAAAGATTACATGAATGAGTTGTTGCAAATGAACGCAACGATTAGAAGTGTTGGTGAGGACAGGACATGGTCCGTGAAGTTAAACTTGCAAGTTAGACATGGTCATGAACCCAGGAGACATTTTGAAATGTCAACCGGTTGGAAGTTATTTTCACAAGAACATAACTTGCAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACGATTACTATTACTCCATCTACAAAGGAACCATGCACGGAGCAGTTTCGAGAAAACCAAGGAGTCCACGAAAAATCAGAGACAACTCCGGTAAAAAATATGGAATATGTGGGCAACTTTGAAGAAGGAATTTTAAGGAGCTGCTCAAAAGCATATGGTCTTAAGAATTCCGATACTCCAAATTTACATAATAAATTCAAGGTTTCTGTAACATCATTATTCATGCTGAAAGTACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAAATTCAGTCGAGTTGAAAGTAGGGGATGGAACATGGTGTGTAGAGGTGAGTTTTAAACAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTAAAGATTGGAGACGCTTGTTTGTTTGAGATTATTGATTTGCAAAATCATGTTTTCAAGGTTTCAATTATCCTAGATGTTTAG 855 0.3719 MGKNVKKCSKTKDGNERNGKYSNPNENPSFTLTLPRSYVEGRKIRLRIPTQFSKDYMNELLQMNATIRSVGEDRTWSVKLNLQVRHGHEPRRHFEMSTGWKLFSQEHNLQVGDVCKFEMTQREPLSFTITITPSTKEPCTEQFRENQGVHEKSETTPVKNMEYVGNFEEGILRSCSKAYGLKNSDTPNLHNKFKVSVTSLFMLKVPSEFLKRHNISSGNSVELKVGDGTWCVEVSFKQHLDYGWFTKGWPEFVRECKVKIGDACLFEIIDLQNHVFKVSIILDV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01384 284 CDD B3_DNA 28 131 IPR003340 GO:0003677
Trre1g01384 284 ProSiteProfiles B3 DNA-binding domain profile. 188 284 IPR003340 GO:0003677
Trre1g01384 284 SUPERFAMILY DNA-binding pseudobarrel domain 25 130 IPR015300 -
Trre1g01384 284 Pfam B3 DNA binding domain 194 274 IPR003340 GO:0003677
Trre1g01384 284 Pfam B3 DNA binding domain 37 131 IPR003340 GO:0003677
Trre1g01384 284 ProSiteProfiles B3 DNA-binding domain profile. 31 135 IPR003340 GO:0003677
Trre1g01384 284 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g01384 284 SMART B3_2 30 135 IPR003340 GO:0003677
Trre1g01384 284 SMART B3_2 193 279 IPR003340 GO:0003677
Trre1g01384 284 CDD B3_DNA 196 281 IPR003340 GO:0003677
Trre1g01384 284 MobiDBLite consensus disorder prediction 1 19 - -
Trre1g01384 284 Gene3D - 174 283 IPR015300 -
Trre1g01384 284 Gene3D - 9 135 IPR015300 -
Trre1g01384 284 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 25 138 IPR044837 -
Trre1g01384 284 SUPERFAMILY DNA-binding pseudobarrel domain 192 281 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01384 Trre-Chr1 10444230 10446175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01384 18 269 REM Transcription Factor Family AT4G31690 25.781 2.23e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01384 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01384 - - tpra:123913547 444.891