Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01383 ATGGGTAAGAAAGCTAAGAAATGCACAAAAACTAAAGATGGTAATGAGAGAAGCTGCACAAATTCTAATCACAATGAGAAACCGAGTTTCACTCTCACATTACCACGATCTTATGTTGAAGGTGATAAGTTAAAATTGAGGATACCTAATTGGTTTTCCAAAGAATACATGAATGAGTTGTTGCAAATGAATGCAACGATTAGAAGTGTTGGCGAGGATCGGACATGGTGCGTGAAGTTATTCTTTGAAGAACACAAAAGAACCTTTACAGTGACCACTGGTTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTTGGTGATATATGTAAATTTGAGATGACTCAACGAGAACCACTTTCTTTCACGATTACTATTATTCCAGCTACAAAGGAACCATGCACGGAGCAGTTTCAAGAAAACCAACGAGTCCAAGAAAAATCAGGGACAACTCCAGTAGAAGATATGGAATATGTGGGTAATTTTGAACAAGGAATTTTAAGGAGCTGCCCAAAAACACATGATTCCGAAAGTACGGATTTACACAATAAATTCAAGGTTTTTGTAACATCATTGTTCATGCTGGTCGTACCAAGTCAGTTCTTGAAGAGACACAATATTTCTAGTGGAAATTCAGTCGAGTTGAAAGTAGGGGACGGAACATGGTTTGTAGAGGTGAGTTATAATCAACATCTTGATTATGGGTGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTTAAGACTGGAGACACTTGTTTGTTTGAGATGATTGATTTGCAAAATCATGTGTTTAAGGTTTCAATTATCCTAGATGTTTAG 831 0.3706 MGKKAKKCTKTKDGNERSCTNSNHNEKPSFTLTLPRSYVEGDKLKLRIPNWFSKEYMNELLQMNATIRSVGEDRTWCVKLFFEEHKRTFTVTTGWKSFSQEHNLQVGDICKFEMTQREPLSFTITIIPATKEPCTEQFQENQRVQEKSGTTPVEDMEYVGNFEQGILRSCPKTHDSESTDLHNKFKVFVTSLFMLVVPSQFLKRHNISSGNSVELKVGDGTWFVEVSYNQHLDYGWFTKGWPEFVRECKVKTGDTCLFEMIDLQNHVFKVSIILDV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01383 276 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g01383 276 Pfam B3 DNA binding domain 44 128 IPR003340 GO:0003677
Trre1g01383 276 Pfam B3 DNA binding domain 189 266 IPR003340 GO:0003677
Trre1g01383 276 Gene3D - 172 275 IPR015300 -
Trre1g01383 276 Gene3D - 8 131 IPR015300 -
Trre1g01383 276 SMART B3_2 184 271 IPR003340 GO:0003677
Trre1g01383 276 SMART B3_2 30 130 IPR003340 GO:0003677
Trre1g01383 276 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 20 134 IPR044837 -
Trre1g01383 276 CDD B3_DNA 28 128 IPR003340 GO:0003677
Trre1g01383 276 ProSiteProfiles B3 DNA-binding domain profile. 31 130 IPR003340 GO:0003677
Trre1g01383 276 SUPERFAMILY DNA-binding pseudobarrel domain 188 271 IPR015300 -
Trre1g01383 276 CDD B3_DNA 185 273 IPR003340 GO:0003677
Trre1g01383 276 ProSiteProfiles B3 DNA-binding domain profile. 180 276 IPR003340 GO:0003677
Trre1g01383 276 SUPERFAMILY DNA-binding pseudobarrel domain 25 126 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01383 Trre-Chr1 10437649 10439141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01383 41 261 REM Transcription Factor Family AT4G31690 30.131 4.84e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01383 B3 4.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01383 - - tpra:123913547 493.041