Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01382 ATGGGTAAGAAAGCTAAGAAATGCACAAAAACTAAAGATGGTAATGAGAGAAGCTGCACAAATTCTAATCACAATGAGAAACCGAGTTTCACTCTCACATTACCACGATCTTATGTTGAAGGTGATAAGTTAAAATTGAGGATACCTAATTGGTTTTCCAAAGAATACATGAATGAGTTGTTGCAAATGAATGCAACGATTAGAAGTGTTGGCGAGGATCGGACATGGTGCGTGAAGTTATTCTTTGAAGAACACAAAAGAACCTTTACAGTGACCACTGGTTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTTGGTGATATATGTAAATTTGAGATGACTCAACGAGAACCACTTTCTTTCACGATTACTATTATTCCAGCTACAAAGGAACCATGCACGGAGCAGTTTCAAGAAAACCAACGAGTCCAAGAAAAATCAGGGACAACTCCAGTAGAAGATATGGAATATGTGGGTAATTTTGAACAAGGAATTTTAAGGAGCTGCCCAAAAACACATGGTGTTACGAATTCCGAAAGTACGGATTTACACAATAAATTCAAGGTTTTTGTAACATCATTGTTCATGCTGGTCGTACCAAGTCAGTTCTTGAAGAGACACAATATTTCTAGTGGAAATTCAGTCGAGTTGAAAGTAGGGGACGGAACATGGTTTGTAGAGGTGAGTTATAATCAACATCTTGATTATGGGTGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTTAAGACTGGAGACACTTGTTTGTTTGAGATGATTGATTTGCAAAATCATGTGTTTAAGGTTTCAATTATCCTAGATGTTTAG 840 0.3714 MGKKAKKCTKTKDGNERSCTNSNHNEKPSFTLTLPRSYVEGDKLKLRIPNWFSKEYMNELLQMNATIRSVGEDRTWCVKLFFEEHKRTFTVTTGWKSFSQEHNLQVGDICKFEMTQREPLSFTITIIPATKEPCTEQFQENQRVQEKSGTTPVEDMEYVGNFEQGILRSCPKTHGVTNSESTDLHNKFKVFVTSLFMLVVPSQFLKRHNISSGNSVELKVGDGTWFVEVSYNQHLDYGWFTKGWPEFVRECKVKTGDTCLFEMIDLQNHVFKVSIILDV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01382 279 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g01382 279 CDD B3_DNA 188 276 IPR003340 GO:0003677
Trre1g01382 279 Pfam B3 DNA binding domain 44 128 IPR003340 GO:0003677
Trre1g01382 279 Pfam B3 DNA binding domain 192 269 IPR003340 GO:0003677
Trre1g01382 279 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 20 134 IPR044837 -
Trre1g01382 279 SUPERFAMILY DNA-binding pseudobarrel domain 25 126 IPR015300 -
Trre1g01382 279 CDD B3_DNA 28 128 IPR003340 GO:0003677
Trre1g01382 279 ProSiteProfiles B3 DNA-binding domain profile. 31 130 IPR003340 GO:0003677
Trre1g01382 279 Gene3D - 8 131 IPR015300 -
Trre1g01382 279 Gene3D - 173 278 IPR015300 -
Trre1g01382 279 ProSiteProfiles B3 DNA-binding domain profile. 183 279 IPR003340 GO:0003677
Trre1g01382 279 SUPERFAMILY DNA-binding pseudobarrel domain 191 274 IPR015300 -
Trre1g01382 279 SMART B3_2 187 274 IPR003340 GO:0003677
Trre1g01382 279 SMART B3_2 30 130 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01382 Trre-Chr1 10437649 10439141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01382 41 264 REM Transcription Factor Family AT4G31690 29.741 3.45e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01382 B3 4.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01382 - - tpra:123913547 504.982