Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01381 ATGTTGTTGCAGATGGTTCCAAGAAATTTTGTAGAGAGATATTGGAAAGATGTACCAAATCCAATATCCCTTACACCTCCAAATGAGTCCGTGTGTAAAATGTTTTGGGTGCAATTTGGTGATGATATTTGGCTTCAGGATTGGAAAAAGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCAGATTTTCATGTCATTATATTTTATGATAGTAAACTAGAAATTGACTATTCAAGTGTGATTTGCAACAATGAACAAGAAGCTAAAGAGAGTGATGATGACGGCTATGTTGAGATTACAAATGAGGAGGCTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTCAAAAACTGTAGATGCAAATAAGAGAAGCTGCACTGATGCTCATCCCGATAAGAATCCATATTTCACTCTCAAATTGTCGCGATCTTATGTGGAAGGTGATACAGTTTTGAGGATACCTAGTTGGTTTTCGAGAAAATACATGAATGAGTTGTTGCAAGGGAATGCAACGATTAGATGTGTTGGTGATGAAGATACATGGTACGTGGCATTAAAGTTTGATGAACGCAATAGAAATTTTATAATCGGAGCTGGTTGGAAGTCATTTTCACGAGATCATAATTTGCAAGTCGGCGATGAATGTAAATTTGAGATGACTCGACGAGAACCACTTTCATTCACAATTACTATTGTTCCAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACGTCGCGTGTAGAAGATATGGATTATGTGGGATATTCTGGAGAAAGAATTTCAAGGAGCTGCCCAAAAACACATGGTATTAAGAATTCCGAAAGTCGGAATTTACATAAATTCAAGGTTTTTGTAACAACATTAGACAAGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATTCGTTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATCAACATCTTGATTATGGGTGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTTAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATTTGCAAAATCATGTGTTTAAGGTTTCAATTGTTCTAGATGTTTAG 1188 0.3721 MLLQMVPRNFVERYWKDVPNPISLTPPNESVCKMFWVQFGDDIWLQDWKKFARSLRCGDLLVFQYKGGSDFHVIIFYDSKLEIDYSSVICNNEQEAKESDDDGYVEITNEEANGNRGGSSKKAKKCSKTVDANKRSCTDAHPDKNPYFTLKLSRSYVEGDTVLRIPSWFSRKYMNELLQGNATIRCVGDEDTWYVALKFDERNRNFIIGAGWKSFSRDHNLQVGDECKFEMTRREPLSFTITIVPATKEPCPEQFQENQRVKEKSETSRVEDMDYVGYSGERISRSCPKTHGIKNSESRNLHKFKVFVTTLDKLVIPSEFLKRHNISNGNSFELKVGEGTWFVEVSYNQHLDYGWFTKGWPEFVRECKVKIGDTCLFEMIDLQNHVFKVSIVLDV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01381 395 SUPERFAMILY DNA-binding pseudobarrel domain 304 391 IPR015300 -
Trre1g01381 395 ProSiteProfiles B3 DNA-binding domain profile. 148 247 IPR003340 GO:0003677
Trre1g01381 395 CDD B3_DNA 304 391 IPR003340 GO:0003677
Trre1g01381 395 Gene3D - 289 394 IPR015300 -
Trre1g01381 395 Gene3D - 125 248 IPR015300 -
Trre1g01381 395 CDD B3_DNA 146 243 IPR003340 GO:0003677
Trre1g01381 395 Pfam B3 DNA binding domain 148 244 IPR003340 GO:0003677
Trre1g01381 395 Pfam B3 DNA binding domain 308 384 IPR003340 GO:0003677
Trre1g01381 395 Gene3D - 3 80 IPR015300 -
Trre1g01381 395 SUPERFAMILY DNA-binding pseudobarrel domain 5 86 IPR015300 -
Trre1g01381 395 ProSiteProfiles B3 DNA-binding domain profile. 299 395 IPR003340 GO:0003677
Trre1g01381 395 SMART B3_2 148 247 IPR003340 GO:0003677
Trre1g01381 395 SMART B3_2 303 395 IPR003340 GO:0003677
Trre1g01381 395 PANTHER B3 DOMAIN-CONTAINING 295 392 - -
Trre1g01381 395 SUPERFAMILY DNA-binding pseudobarrel domain 143 243 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01381 Trre-Chr1 10430452 10432441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01381 48 223 REM Transcription Factor Family AT4G31660 28.962 9.29e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01381 B3 5.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01381 - - tpra:123923263 566.229