Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01380 ATGTTGTTGCAGATGGTTCCAAGAAATTTTGTAGAGAGATATTGGAAAGATGTACCAAATCCAATATCCCTTACACCTCCAAATGAGTCCGTGTGTAAAATGTTTTGGGTGCAATTTGGTGATGATATTTGGCTTCAGGATTGGAAAAAGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCAGATTTTCATGTCATTATATTTTATGATAGTAAACTAGAAATTGACTATTCAAGTGTGATTTGCAACAATGAACAAGAAGCTAAAGAGAGTGATGATGACGGCTATGTTGAGATTACAAATGAGGAGGCTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTCAAAAACTGTAGATGCAAATAAGAGAAGCTGCACTGATGCTCATCCCGATAAGAATCCATATTTCACTCTCAAATTGTCGCGATCTTATGTGGAAGGTGATACAGTTTTGAGGATACCTAGTTGGTTTTCGAGAAAATACATGAATGAGTTGTTGCAAGGGAATGCAACGATTAGATGTGTTGGTGATGAAGATACATGGTACGTGGCATTAAAGTTTGATGAACGCAATAGAAATTTTATAATCGGAGCTGGTTGGAAGTCATTTTCACGAGATCATAATTTGCAAGTCGGCGATGAATGTAAATTTGAGATGACTCGACGAGAACCACTTTCATTCACAATTACTATTGTTCCAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACGTCGCGTGTAGAAGATATGGATTATGTGGGATATTCTGGAGAAAGAATTTCAAGGAGCTGCCCAAAAACACATGATTCCGAAAGTCGGAATTTACATAAATTCAAGGTTTTTGTAACAACATTAGACAAGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATTCGTTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATCAACATCTTGATTATGGGTGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTTAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATTTGCAAAATCATGTGTTTAAGGTTTCAATTGTTCTAGATGTTTAG 1179 0.3732 MLLQMVPRNFVERYWKDVPNPISLTPPNESVCKMFWVQFGDDIWLQDWKKFARSLRCGDLLVFQYKGGSDFHVIIFYDSKLEIDYSSVICNNEQEAKESDDDGYVEITNEEANGNRGGSSKKAKKCSKTVDANKRSCTDAHPDKNPYFTLKLSRSYVEGDTVLRIPSWFSRKYMNELLQGNATIRCVGDEDTWYVALKFDERNRNFIIGAGWKSFSRDHNLQVGDECKFEMTRREPLSFTITIVPATKEPCPEQFQENQRVKEKSETSRVEDMDYVGYSGERISRSCPKTHDSESRNLHKFKVFVTTLDKLVIPSEFLKRHNISNGNSFELKVGEGTWFVEVSYNQHLDYGWFTKGWPEFVRECKVKIGDTCLFEMIDLQNHVFKVSIVLDV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01380 392 ProSiteProfiles B3 DNA-binding domain profile. 296 392 IPR003340 GO:0003677
Trre1g01380 392 ProSiteProfiles B3 DNA-binding domain profile. 148 247 IPR003340 GO:0003677
Trre1g01380 392 Pfam B3 DNA binding domain 305 381 IPR003340 GO:0003677
Trre1g01380 392 Pfam B3 DNA binding domain 148 244 IPR003340 GO:0003677
Trre1g01380 392 SUPERFAMILY DNA-binding pseudobarrel domain 301 388 IPR015300 -
Trre1g01380 392 PANTHER B3 DOMAIN-CONTAINING 292 389 - -
Trre1g01380 392 SMART B3_2 148 247 IPR003340 GO:0003677
Trre1g01380 392 SMART B3_2 300 392 IPR003340 GO:0003677
Trre1g01380 392 CDD B3_DNA 146 243 IPR003340 GO:0003677
Trre1g01380 392 Gene3D - 284 391 IPR015300 -
Trre1g01380 392 Gene3D - 125 248 IPR015300 -
Trre1g01380 392 Gene3D - 3 80 IPR015300 -
Trre1g01380 392 CDD B3_DNA 301 388 IPR003340 GO:0003677
Trre1g01380 392 SUPERFAMILY DNA-binding pseudobarrel domain 5 86 IPR015300 -
Trre1g01380 392 SUPERFAMILY DNA-binding pseudobarrel domain 143 243 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01380 Trre-Chr1 10430452 10432441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01380 48 223 REM Transcription Factor Family AT4G31660 28.962 9.70e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01380 B3 5.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01380 - - tpra:123923263 572.778