Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01378 ATGTCATTGTATTGTAGTCCTCCAAAGTTCTTCAAGATTATCCAAAATCATGAACTTCAAAATGGAGAGCTTAGGGTACCAAAGAAGTTTGTGGAAAAATATTGGGAAGGAATACCAAATCCAGTAGTGATTAGACTCCCTAATGGTGTTCAACAAGATATATGTTGGGTGAAGCGCGACGGAGATATTTGGTTTCGGAAGAACTGGGAGAAAATTGCAAAGTTTCTGAAATTTGGATTTGTTGTGTATTTCAAATACATGGGAGGATCATGTTTTGAGCTTGAGATATTTGGACTCAATTGTTTGGAAATTGATTATTCCAACATTAAGTTAAAAAAACAAGCTCAACAATTTATTGAAGTGAGTGATGAAAGTGATGATTATGATGATGATAGTGATGAGAGTGAAATACATAAACAATTTCAAAGGACACAAAATGGAAAGAAAAAAATGAATATGGATTTTGATTTTGATTTTGATACTACTCAGGAAAAAATCTCAAGTATGAATAAGAAGGTCAAAGAGGGCATAAAAGTTGAACCTAATGTTGCTAGTACATCACAAAGAAGAAAAAGTGGTGTGACTAATAACAACAATCCAAGTTTTAAACTTAAATTGACACCAACTTATGCACTTGGCTATTTATTTAGAATACCATCTGACTTTTCAAAAAATTACATGAAAGGGTTTGATGGGATTGCAAGTTTAAGGGTTGTTGGTAAGAATAGGATTTGGAAGCTCAATGTGAAATATGATTGCCTAACAAAATATTCTGTTGTGAATGGTGGTTGGCATTCATTTGCCGAGGAAAATTACTTGAAAATTGGCGATGTTTGTAACTTTGAGATGATTCGAGCAAAACCATTTACATTCGTTGTTACTATTACCCGCACAAGAGAGAAACCAAGGACTCGCCACTTGCGAGGTTACGAAAAAGGGAACTCGAAAGGTCCTAATGCGATGAAACAAAACGCATTCAAAAATGTTGTGAATTCCTCATACCCGTATGTACCAAAAGAGGAGTTGAGTAGACGTGTTGCGGCGTTGAAAGTGGGAGGAAAACCGTGCCCTGTAAACTGGTATCGTCAGCCATAG 1095 0.3571 MSLYCSPPKFFKIIQNHELQNGELRVPKKFVEKYWEGIPNPVVIRLPNGVQQDICWVKRDGDIWFRKNWEKIAKFLKFGFVVYFKYMGGSCFELEIFGLNCLEIDYSNIKLKKQAQQFIEVSDESDDYDDDSDESEIHKQFQRTQNGKKKMNMDFDFDFDTTQEKISSMNKKVKEGIKVEPNVASTSQRRKSGVTNNNNPSFKLKLTPTYALGYLFRIPSDFSKNYMKGFDGIASLRVVGKNRIWKLNVKYDCLTKYSVVNGGWHSFAEENYLKIGDVCNFEMIRAKPFTFVVTITRTREKPRTRHLRGYEKGNSKGPNAMKQNAFKNVVNSSYPYVPKEELSRRVAALKVGGKPCPVNWYRQP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01378 364 Pfam B3 DNA binding domain 209 298 IPR003340 GO:0003677
Trre1g01378 364 PANTHER B3 DOMAIN-CONTAINING 201 316 - -
Trre1g01378 364 SMART B3_2 202 299 IPR003340 GO:0003677
Trre1g01378 364 SMART B3_2 10 100 IPR003340 GO:0003677
Trre1g01378 364 Gene3D - 5 101 IPR015300 -
Trre1g01378 364 SUPERFAMILY DNA-binding pseudobarrel domain 6 100 IPR015300 -
Trre1g01378 364 CDD B3_DNA 200 297 IPR003340 GO:0003677
Trre1g01378 364 CDD B3_DNA 8 97 IPR003340 GO:0003677
Trre1g01378 364 ProSiteProfiles B3 DNA-binding domain profile. 201 299 IPR003340 GO:0003677
Trre1g01378 364 Gene3D - 183 301 IPR015300 -
Trre1g01378 364 SUPERFAMILY DNA-binding pseudobarrel domain 196 297 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01378 Trre-Chr1 10426798 10428463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01378 8 298 B3 DNA Binding Superfamily AT3G18990 25.074 1.09e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01378 B3 3.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01378 - - tpra:123898681 297.745