Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01377 ATGATTTGCAACGATGAACAAGAAGATAAAGAGAGTGATGATGACGGCTATGTTGAGATTACAAATGAGGGTGACAATACCAAACAATCCCTCAAGAAAAAGAAAATCAACTCAAATGATAGTGCAACTACTGCTGCTACTACTCAAGTGACAAATCCAGCAAAACGTCTCAGGCAAGTCAAGAGAAAAATTAATATGAAGGCAACCCAGCAAAATGTCTCAGGCAATTTTGCAGAGGCTAATGGAAAAAGAGGAGGCTGCAGTAAGAAAGCTAAGAAATGCTTAAAAACTGTAGATGCAAATAAGAGAAGCTGCACTGATTCTCATCCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATCAATTGAGGATACCACATTGGTTTTCGAAAGAATACATGAATGAGTTGTTGCAAGGGAATGCAACAATTAGAAGTGCTGGTGATGAAAAGACATGGAACGTGGCATTACACTTTAATGAACGCAATAGACATTTTACAACGGGAGCTGGCTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTCGGCGATGATTGTAAATTTGAGATGACTCAACGAGAACCACTGTCATTCACAATGACTATTGTTCCAGCTACAAAGGAACCATTGGCAGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAAAGACATCGCCTGTAGAAGATATGCGTTATGTGGGCAATTATGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGGTCTTAAGAATTCTGAAAGTCCGAATTTACATAATAAATTCAATGTTTTTGTAACAACATTAGACAAGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATACAGTTGTGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAAGTGAGTTATAATCAACATCTTGATTATGGATGGTTTGCTAAAGGTTGGCCAGAATTTGTGAGAGAATGTAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATTATTGATGTGCAAAATCATGTGTTCAAGGTTTTAATTATCCTAGATGTTTAG 1092 0.3745 MICNDEQEDKESDDDGYVEITNEGDNTKQSLKKKKINSNDSATTAATTQVTNPAKRLRQVKRKINMKATQQNVSGNFAEANGKRGGCSKKAKKCLKTVDANKRSCTDSHPNENPNFTLKLSRSYVEGDQLRIPHWFSKEYMNELLQGNATIRSAGDEKTWNVALHFNERNRHFTTGAGWKSFSQEHNLQVGDDCKFEMTQREPLSFTMTIVPATKEPLAEQFQENQRVKEKSKTSPVEDMRYVGNYGEGISRSCPKTHGLKNSESPNLHNKFNVFVTTLDKLVIPSEFLKRHNISNGNTVVLKVGEGTWFVEVSYNQHLDYGWFAKGWPEFVRECKVKIGDTCLFEIIDVQNHVFKVLIILDV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01377 363 MobiDBLite consensus disorder prediction 1 53 - -
Trre1g01377 363 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 129 357 IPR039218 -
Trre1g01377 363 MobiDBLite consensus disorder prediction 36 53 - -
Trre1g01377 363 Pfam B3 DNA binding domain 119 210 IPR003340 GO:0003677
Trre1g01377 363 Pfam B3 DNA binding domain 276 356 IPR003340 GO:0003677
Trre1g01377 363 CDD B3_DNA 114 210 IPR003340 GO:0003677
Trre1g01377 363 Gene3D - 258 362 IPR015300 -
Trre1g01377 363 Gene3D - 89 215 IPR015300 -
Trre1g01377 363 ProSiteProfiles B3 DNA-binding domain profile. 115 214 IPR003340 GO:0003677
Trre1g01377 363 ProSiteProfiles B3 DNA-binding domain profile. 267 363 IPR003340 GO:0003677
Trre1g01377 363 CDD B3_DNA 276 360 IPR003340 GO:0003677
Trre1g01377 363 SMART B3_2 275 363 IPR003340 GO:0003677
Trre1g01377 363 SMART B3_2 116 214 IPR003340 GO:0003677
Trre1g01377 363 SUPERFAMILY DNA-binding pseudobarrel domain 110 202 IPR015300 -
Trre1g01377 363 SUPERFAMILY DNA-binding pseudobarrel domain 275 358 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01377 Trre-Chr1 10421066 10423016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01377 129 348 REM Transcription Factor Family AT4G31640 24.268 1.64e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01377 B3 1.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01377 - - tpra:123923263 548.895