Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01376 ATGATTTGCAACGATGAACAAGAAGATAAAGAGAGTGATGATGACGGCTATGTTGAGATTACAAATGAGGGTGACAATACCAAACAATCCCTCAAGAAAAAGAAAATCAACTCAAATGATAGTGCAACTACTGCTGCTACTACTCAAGTGACAAATCCAGCAAAACGTCTCAGGCAAGTCAAGAGAAAAATTAATATGAAGGCAACCCAGCAAAATGTCTCAGGCAATTTTGCAGAGGCTAATGGAAAAAGAGGAGGCTGCAGTAAGAAAGCTAAGAAATGCTTAAAAACTGTAGATGCAAATAAGAGAAGCTGCACTGATTCTCATCCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATCAATTGAGGATACCACATTGGTTTTCGAAAGAATACATGAATGAGTTGTTGCAAGGGAATGCAACAATTAGAAGTGCTGGTGATGAAAAGACATGGAACGTGGCATTACACTTTAATGAACGCAATAGACATTTTACAACGGGAGCTGGCTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTCGGCGATGATTGTAAATTTGAGATGACTCAACGAGAACCACTGTCATTCACAATGACTATTGTTCCAGCTACAAAGGAACCATTGGCAGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAAAGACATCGCCTGTAGAAGATATGCGTTATGTGGGCAATTATGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGATTCTGAAAGTCCGAATTTACATAATAAATTCAATGTTTTTGTAACAACATTAGACAAGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATACAGTTGTGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAAGTGAGTTATAATCAACATCTTGATTATGGATGGTTTGCTAAAGGTTGGCCAGAATTTGTGAGAGAATGTAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATTATTGATGTGCAAAATCATGTGTTCAAGGTTTTAATTATCCTAGATGTTTAG 1083 0.3749 MICNDEQEDKESDDDGYVEITNEGDNTKQSLKKKKINSNDSATTAATTQVTNPAKRLRQVKRKINMKATQQNVSGNFAEANGKRGGCSKKAKKCLKTVDANKRSCTDSHPNENPNFTLKLSRSYVEGDQLRIPHWFSKEYMNELLQGNATIRSAGDEKTWNVALHFNERNRHFTTGAGWKSFSQEHNLQVGDDCKFEMTQREPLSFTMTIVPATKEPLAEQFQENQRVKEKSKTSPVEDMRYVGNYGEGISRSCPKTHDSESPNLHNKFNVFVTTLDKLVIPSEFLKRHNISNGNTVVLKVGEGTWFVEVSYNQHLDYGWFAKGWPEFVRECKVKIGDTCLFEIIDVQNHVFKVLIILDV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01376 360 MobiDBLite consensus disorder prediction 36 54 - -
Trre1g01376 360 CDD B3_DNA 273 357 IPR003340 GO:0003677
Trre1g01376 360 MobiDBLite consensus disorder prediction 1 54 - -
Trre1g01376 360 SMART B3_2 272 360 IPR003340 GO:0003677
Trre1g01376 360 SMART B3_2 116 214 IPR003340 GO:0003677
Trre1g01376 360 CDD B3_DNA 114 210 IPR003340 GO:0003677
Trre1g01376 360 ProSiteProfiles B3 DNA-binding domain profile. 264 360 IPR003340 GO:0003677
Trre1g01376 360 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 128 354 IPR039218 -
Trre1g01376 360 ProSiteProfiles B3 DNA-binding domain profile. 115 214 IPR003340 GO:0003677
Trre1g01376 360 Gene3D - 256 359 IPR015300 -
Trre1g01376 360 Gene3D - 89 215 IPR015300 -
Trre1g01376 360 SUPERFAMILY DNA-binding pseudobarrel domain 272 355 IPR015300 -
Trre1g01376 360 Pfam B3 DNA binding domain 273 353 IPR003340 GO:0003677
Trre1g01376 360 Pfam B3 DNA binding domain 119 210 IPR003340 GO:0003677
Trre1g01376 360 SUPERFAMILY DNA-binding pseudobarrel domain 110 202 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01376 Trre-Chr1 10421066 10423016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01376 129 345 REM Transcription Factor Family AT4G31640 26.180 1.76e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01376 B3 1.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01376 - - tpra:123923263 555.444