Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01375 ATGTTGTTGCAGATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTCAGACTTCCAAATGAATCCGTGTGTAAAATGTTTTGGGTCCAATTTGGTGATGATATTTGGCTTCAAGATTGGAAAAAATTTGCACGGTCACTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCAGATTTTCATGTCATTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAGTGTGATTTTCAACGATGAACAAGAAGCTAAAGAGATTGATGATGACGGCAATGTTGAGATTACAAATGAGGAGGCTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTCAAAAAATGTAGATGCAAATAAGAGAAGCTGCACTGATTCTCATCCCAATGAGAATCCCAATTTTACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATCAATTAAAATTGAGGATTCCTAGATGGTTTTCGAAAGAATACATGAATGAGTTAGCGCAAGGGAATGCAACAATTAGAGGTGTTGGTGATGAAAAGACATGGAACGTGGCATTACATTTTAGTGAATGCAACAGACATTTTACAATGGGAGCTGGTTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTCGGCGATGATTGTAAATTTGAGATGACACAACGAGAACCACTTTCATTCACAATTACTATTGTTCCAGTTCCAGCTACTAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACATCGCCTGTAGAAGATATGGATTATGTGGGCAATTATGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGGTATTAAGAATTCTAAAAGTCCGAATTTACAAAATAAATTCAAGGTTTTTGTATCATCATTAGACAAGCTGGTCATACCAAGTGAGTTTTTGAAGAGACACAATATATCTAATGGAAATTCAGTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATCAAGATCTTGATTATGGGGGGTTCACTAAAGGTTGGAAAGAGTTTGTGAGAGAATGCAAAGTGAAGATTGGAGACACTTGTTTTTTTGAGCCGATTGATGTGCAAAATCATGTGTTCAATGTTTCAATTATTCTAAATGTTTAG 1200 0.3633 MLLQMVPRNFVERYWKDVSNPISLRLPNESVCKMFWVQFGDDIWLQDWKKFARSLRCGDLLVFQYKGGSDFHVIIFDDSKLEIDYSSVIFNDEQEAKEIDDDGNVEITNEEANGNRGGSSKKAKKCSKNVDANKRSCTDSHPNENPNFTLKLSRSYVEGDQLKLRIPRWFSKEYMNELAQGNATIRGVGDEKTWNVALHFSECNRHFTMGAGWKSFSQEHNLQVGDDCKFEMTQREPLSFTITIVPVPATKEPCPEQFQENQRVKEKSETSPVEDMDYVGNYGEGISRSCPKTHGIKNSKSPNLQNKFKVFVSSLDKLVIPSEFLKRHNISNGNSVELKVGEGTWFVEVSYNQDLDYGGFTKGWKEFVRECKVKIGDTCFFEPIDVQNHVFNVSIILNV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01375 399 ProSiteProfiles B3 DNA-binding domain profile. 149 248 IPR003340 GO:0003677
Trre1g01375 399 CDD B3_DNA 5 77 IPR003340 GO:0003677
Trre1g01375 399 Gene3D - 3 80 IPR015300 -
Trre1g01375 399 MobiDBLite consensus disorder prediction 256 276 - -
Trre1g01375 399 PANTHER B3 DOMAIN-CONTAINING 299 396 - -
Trre1g01375 399 SMART B3_2 307 399 IPR003340 GO:0003677
Trre1g01375 399 SMART B3_2 2 79 IPR003340 GO:0003677
Trre1g01375 399 SMART B3_2 148 248 IPR003340 GO:0003677
Trre1g01375 399 SUPERFAMILY DNA-binding pseudobarrel domain 143 242 IPR015300 -
Trre1g01375 399 MobiDBLite consensus disorder prediction 258 273 - -
Trre1g01375 399 SUPERFAMILY DNA-binding pseudobarrel domain 310 392 IPR015300 -
Trre1g01375 399 CDD B3_DNA 146 244 IPR003340 GO:0003677
Trre1g01375 399 SUPERFAMILY DNA-binding pseudobarrel domain 5 78 IPR015300 -
Trre1g01375 399 ProSiteProfiles B3 DNA-binding domain profile. 303 399 IPR003340 GO:0003677
Trre1g01375 399 MobiDBLite consensus disorder prediction 106 126 - -
Trre1g01375 399 Pfam B3 DNA binding domain 152 244 IPR003340 GO:0003677
Trre1g01375 399 Pfam B3 DNA binding domain 312 394 IPR003340 GO:0003677
Trre1g01375 399 CDD B3_DNA 308 396 IPR003340 GO:0003677
Trre1g01375 399 Gene3D - 125 247 IPR015300 -
Trre1g01375 399 Gene3D - 293 398 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01375 Trre-Chr1 10414724 10416827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01375 163 391 REM Transcription Factor Family AT2G24690 25.820 1.19e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01375 B3 7.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01375 - - tpra:123913547 576.63