Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01374 ATGTTGTTGCAGATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTCAGACTTCCAAATGAATCCGTGTGTAAAATGTTTTGGGTCCAATTTGGTGATGATATTTGGCTTCAAGATTGGAAAAAATTTGCACGGTCACTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCAGATTTTCATGTCATTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAGTGTGATTTTCAACGATGAACAAGAAGCTAAAGAGATTGATGATGACGGCAATGTTGAGATTACAAATGAGGAGGCTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTCAAAAAATGTAGATGCAAATAAGAGAAGCTGCACTGATTCTCATCCCAATGAGAATCCCAATTTTACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATCAATTAAAATTGAGGATTCCTAGATGGTTTTCGAAAGAATACATGAATGAGTTAGCGCAAGGGAATGCAACAATTAGAGGTGTTGGTGATGAAAAGACATGGAACGTGGCATTACATTTTAGTGAATGCAACAGACATTTTACAATGGGAGCTGGTTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTCGGCGATGATTGTAAATTTGAGATGACACAACGAGAACCACTTTCATTCACAATTACTATTGTTCCAGTTCCAGCTACTAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACATCGCCTGTAGAAGATATGGATTATGTGGGCAATTATGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGATTCTAAAAGTCCGAATTTACAAAATAAATTCAAGGTTTTTGTATCATCATTAGACAAGCTGGTCATACCAAGTGAGTTTTTGAAGAGACACAATATATCTAATGGAAATTCAGTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATCAAGATCTTGATTATGGGGGGTTCACTAAAGGTTGGAAAGAGTTTGTGAGAGAATGCAAAGTGAAGATTGGAGACACTTGTTTTTTTGAGCCGATTGATGTGCAAAATCATGTGTTCAATGTTTCAATTATTCTAAATGTTTAG 1191 0.3644 MLLQMVPRNFVERYWKDVSNPISLRLPNESVCKMFWVQFGDDIWLQDWKKFARSLRCGDLLVFQYKGGSDFHVIIFDDSKLEIDYSSVIFNDEQEAKEIDDDGNVEITNEEANGNRGGSSKKAKKCSKNVDANKRSCTDSHPNENPNFTLKLSRSYVEGDQLKLRIPRWFSKEYMNELAQGNATIRGVGDEKTWNVALHFSECNRHFTMGAGWKSFSQEHNLQVGDDCKFEMTQREPLSFTITIVPVPATKEPCPEQFQENQRVKEKSETSPVEDMDYVGNYGEGISRSCPKTHDSKSPNLQNKFKVFVSSLDKLVIPSEFLKRHNISNGNSVELKVGEGTWFVEVSYNQDLDYGGFTKGWKEFVRECKVKIGDTCFFEPIDVQNHVFNVSIILNV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01374 396 SUPERFAMILY DNA-binding pseudobarrel domain 5 78 IPR015300 -
Trre1g01374 396 CDD B3_DNA 305 393 IPR003340 GO:0003677
Trre1g01374 396 ProSiteProfiles B3 DNA-binding domain profile. 149 248 IPR003340 GO:0003677
Trre1g01374 396 Pfam B3 DNA binding domain 309 391 IPR003340 GO:0003677
Trre1g01374 396 Pfam B3 DNA binding domain 152 244 IPR003340 GO:0003677
Trre1g01374 396 CDD B3_DNA 5 77 IPR003340 GO:0003677
Trre1g01374 396 MobiDBLite consensus disorder prediction 256 276 - -
Trre1g01374 396 PANTHER B3 DOMAIN-CONTAINING 296 393 - -
Trre1g01374 396 SMART B3_2 2 79 IPR003340 GO:0003677
Trre1g01374 396 SMART B3_2 304 396 IPR003340 GO:0003677
Trre1g01374 396 SMART B3_2 148 248 IPR003340 GO:0003677
Trre1g01374 396 Gene3D - 125 247 IPR015300 -
Trre1g01374 396 Gene3D - 291 395 IPR015300 -
Trre1g01374 396 SUPERFAMILY DNA-binding pseudobarrel domain 143 242 IPR015300 -
Trre1g01374 396 ProSiteProfiles B3 DNA-binding domain profile. 300 396 IPR003340 GO:0003677
Trre1g01374 396 MobiDBLite consensus disorder prediction 258 273 - -
Trre1g01374 396 CDD B3_DNA 146 244 IPR003340 GO:0003677
Trre1g01374 396 Gene3D - 3 80 IPR015300 -
Trre1g01374 396 MobiDBLite consensus disorder prediction 106 126 - -
Trre1g01374 396 SUPERFAMILY DNA-binding pseudobarrel domain 307 389 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01374 Trre-Chr1 10414724 10416827 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01374 6 92 B3 DNA Binding Superfamily AT3G18990 36.667 7.51e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01374 B3 7.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01374 - - tpra:123923263 582.793