Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01373 ATGAAGGCAACCCAACAAAAAGTATCAGAGGTTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTTAAAAACTGTAGATGAAAATAAGAGAAGCTGCACTGGTTCTCATTCCAATGAGAATCCCAGTTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATTTATCAATGTTGAGGATACCTACTTGGTTTTCGAAAGAATACATGAATGAGTTGTCGCAAGGGAATGCAATGATTAAAAGTGTTGGTGATGAAATGACATGGAACGTGGCATTACACTTTGATTTATGCAATAGAAATTTTAGAGTGGGAGCTGGTTGGAAGTCATTTTCACGAGAACATAACTTGCAAGTCGGTGATGAATGTAAATTTGAGATGACTGAACGAGAACCACTTTCATTCACAATTACTATTGTTCCAGCTACAAAGGAACCATGCCCGGAGCAGTTTGAAGAAAACCAACGAGTCAAAGAAAAATCAGAGGCATCGCCTATAGAAGACATGGATTATGTGAGTAATTATGGAGAAGGAGTTTCAAGGAGCTGCCCAAAAACACATGATTCTAAAAGTCCGAATTTACATAATAAATTCAAGGTTTTTGTATCATCATTATACAAGCTGGTCATACCAAGTGAGTTCTTGAAGATACATAATATTTCTAGTGGAAGTTCAGTCGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAATCAAGAACTTGATTATGGGGAGTTCACTAAAGGTTGGAAAGAATTTGTGAGAGAATGCAAAGTGATGATTGGAGAAACTTGTTTGTTTGAGATGATTGATTTGCAAAATCATGTGTTCAAGGTTACAATTATCCTAGATGTTTAG 882 0.3696 MKATQQKVSEVNGNRGGSSKKAKKCLKTVDENKRSCTGSHSNENPSFTLKLSRSYVEGDLSMLRIPTWFSKEYMNELSQGNAMIKSVGDEMTWNVALHFDLCNRNFRVGAGWKSFSREHNLQVGDECKFEMTEREPLSFTITIVPATKEPCPEQFEENQRVKEKSEASPIEDMDYVSNYGEGVSRSCPKTHDSKSPNLHNKFKVFVSSLYKLVIPSEFLKIHNISSGSSVELKVGEGTWFVEVSYNQELDYGEFTKGWKEFVRECKVMIGETCLFEMIDLQNHVFKVTIILDV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01373 293 ProSiteProfiles B3 DNA-binding domain profile. 48 147 IPR003340 GO:0003677
Trre1g01373 293 SMART B3_2 201 293 IPR003340 GO:0003677
Trre1g01373 293 SMART B3_2 47 147 IPR003340 GO:0003677
Trre1g01373 293 Gene3D - 186 292 IPR015300 -
Trre1g01373 293 Gene3D - 26 148 IPR015300 -
Trre1g01373 293 ProSiteProfiles B3 DNA-binding domain profile. 197 293 IPR003340 GO:0003677
Trre1g01373 293 CDD B3_DNA 202 290 IPR003340 GO:0003677
Trre1g01373 293 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 153 IPR044837 -
Trre1g01373 293 MobiDBLite consensus disorder prediction 1 16 - -
Trre1g01373 293 CDD B3_DNA 45 143 IPR003340 GO:0003677
Trre1g01373 293 SUPERFAMILY DNA-binding pseudobarrel domain 42 143 IPR015300 -
Trre1g01373 293 Pfam B3 DNA binding domain 50 144 IPR003340 GO:0003677
Trre1g01373 293 Pfam B3 DNA binding domain 206 283 IPR003340 GO:0003677
Trre1g01373 293 MobiDBLite consensus disorder prediction 1 25 - -
Trre1g01373 293 SUPERFAMILY DNA-binding pseudobarrel domain 204 290 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01373 Trre-Chr1 10402889 10404582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01373 63 286 REM Transcription Factor Family AT2G24690 27.273 4.20e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01373 B3 1.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01373 - - tpra:123923263 470.7