Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01372 ATGACAATGTCAAAATGTTTTTTCAAGGTCATTGTCGATACAACCATTATAAACAAAGAACTTATGATTCCTAGGAGTTTTGTGAAGAAATATGGGAAGGAACTATCAAACCCAGTAACCCTCATTCTACCAAATGGTGATAAATGGAAAATAAATTGGATAAAACGTGATCATGATATTTGGTTTAAAAATGGTTGGGAAAAATTTGCACAACACTATTCTATGAGCTTTGGCCATTTTCTAGTTTTTAGATTTGAAAAAGAGTCACAATTTCAAGTTATAATATTTGATAAGAGTGCTTTGGAAATAAACTATTTGAGTAAAAGATTAAGCTCTAGAGATGATCAAAGGAACAACAACCAACATGATTTAGAAGATGCTGAAAAGAAAGATAATGATATTAATTATATTGAAATTTCTGATGATGATGATGATAATGAGATGATAAGATCTTCATCAACTCAACCTCACAAAAGAATGAAAATCAATGATGCTTCATCTCAAATGAAAAAGATAAAGAAGGAAAAAATCAATTTAGTCCAAGAAGTCAAAGGAGGTAATAAGGCAAGTTTCTTCAAAGGTAAGAATTGCTCAGCAAATGAAGCTATGACAAGGAAAGAAACACTACAAGACACTAAAAGGAGAGCCATGAGTTTACATTTTGATAATCCCTCTTTCATTCGTCCATTGCATCAATCCTACCTCCAACATGTGTTTATACCAACATGGTTTTCCAAAGAATATTTGAATGGCAAGAAAGGGATGGCAACCATAGTGATTGGTGAGGAGGATAAGACTTGGGATGTGAAGTTCAAGTTCAATGTTGACTCTAATAGAACAATGATAAGTGCTGGATGGGGGCCAATTGTTGAGGAATATGATTTAAAAGTAGGTGATATTTGTGTCTTTGAGATGATTGATAGCACAAATATTTCATTTAAAGTTCATATAGTCCGAGCCAATGCATGA 969 0.3271 MTMSKCFFKVIVDTTIINKELMIPRSFVKKYGKELSNPVTLILPNGDKWKINWIKRDHDIWFKNGWEKFAQHYSMSFGHFLVFRFEKESQFQVIIFDKSALEINYLSKRLSSRDDQRNNNQHDLEDAEKKDNDINYIEISDDDDDNEMIRSSSTQPHKRMKINDASSQMKKIKKEKINLVQEVKGGNKASFFKGKNCSANEAMTRKETLQDTKRRAMSLHFDNPSFIRPLHQSYLQHVFIPTWFSKEYLNGKKGMATIVIGEEDKTWDVKFKFNVDSNRTMISAGWGPIVEEYDLKVGDICVFEMIDSTNISFKVHIVRANA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01372 322 Pfam B3 DNA binding domain 7 98 IPR003340 GO:0003677
Trre1g01372 322 Pfam B3 DNA binding domain 232 320 IPR003340 GO:0003677
Trre1g01372 322 ProSiteProfiles B3 DNA-binding domain profile. 223 321 IPR003340 GO:0003677
Trre1g01372 322 Coils Coil 162 182 - -
Trre1g01372 322 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Trre1g01372 322 Gene3D - 2 100 IPR015300 -
Trre1g01372 322 SMART B3_2 226 321 IPR003340 GO:0003677
Trre1g01372 322 SMART B3_2 7 99 IPR003340 GO:0003677
Trre1g01372 322 SUPERFAMILY DNA-binding pseudobarrel domain 222 319 IPR015300 -
Trre1g01372 322 Gene3D - 203 322 IPR015300 -
Trre1g01372 322 MobiDBLite consensus disorder prediction 145 167 - -
Trre1g01372 322 PANTHER B3 DOMAIN-CONTAINING 4 313 - -
Trre1g01372 322 CDD B3_DNA 5 97 IPR003340 GO:0003677
Trre1g01372 322 SUPERFAMILY DNA-binding pseudobarrel domain 5 99 IPR015300 -
Trre1g01372 322 CDD B3_DNA 224 319 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01372 Trre-Chr1 10399684 10401471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01372 3 321 B3 DNA Binding Superfamily AT3G18990 29.070 5.44e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01372 B3 5.1e-15 CL0405