Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01371 ATGGCCTCTCAAGAACTTGATCATGAGACTAATATTGGTGTCCACTTTATCAAGATTATTCTTCAAACTACTCTTCAACAAGGAAAATTGAGAGTGCCGATAAGTTTTGTGAGGAGGCATTGGAAAGGAATAACAAACCCGGTTACTCTAAGGCTTCCAAATTCGACCGAAAAGAAAGTTTTTTGGGAGAAAACTAGTGATTATGATATTTGGTTTTGCAATGGTTGGAAAGAATTTACAAATTATTTGTCTTTGGGTGATTTACAAATTTTGGTGTTTCGATATCAAGGAAATTCGCTCTTTAATGTGATTGGATTTGGAAAATGCGGGTTAGAAATAAAATATCCTTTAAGAGAAACTAGTGAAAAACTTGAAGAGGTTGAAGAAAGCGATTGTTCTTTGAAAGTTATTGAGCATCCTTACTTATTGCGGGATAAAAGGGCGAAATCTCCATCGCCGTCTTCTAAAGTTTGTAAAAAGATTAAAATCAATCCAAAAGAACAAAAAGAATTTAAGCATGAGAAGAGAAAAGTTCAAGAACATCCAAGATTTCCTAATTTTAAGAATATGGACAATGGATGTAGTTGTGATGATCTTAAGGAAAGAAGCAGAGTTTTGTACGATAAAGTGAAGAAAAAATTCAAATCTGATAAGGAATTTTTCATACGTATGATTCTCAAGACATACATGGAGAGAGATATCTTGGGTATACCAATTGAGTTTGCTAAGACACATCTGCACAGGATGGAAGGAAGAAATGCTACACTTTTTGTTGACCAAAACAGAATATGGAATGTTAATTTGAAGATCTGTTTAAATAAACAATTTACACTTGTGGATGGTTGGACTAAATTTTGTGCTGACAATAATTTGAAACTTGGTGATGTTTGTGTTTTTATACTAAACAAATGCAAAGGAACAGTTTCATTCCAAGTTGTTATTTTCTCTCTAGAAAAAGACATGAAGACTCCATATTTTCAAGGAAGTACCAATAAACTATGTTAG 1005 0.3294 MASQELDHETNIGVHFIKIILQTTLQQGKLRVPISFVRRHWKGITNPVTLRLPNSTEKKVFWEKTSDYDIWFCNGWKEFTNYLSLGDLQILVFRYQGNSLFNVIGFGKCGLEIKYPLRETSEKLEEVEESDCSLKVIEHPYLLRDKRAKSPSPSSKVCKKIKINPKEQKEFKHEKRKVQEHPRFPNFKNMDNGCSCDDLKERSRVLYDKVKKKFKSDKEFFIRMILKTYMERDILGIPIEFAKTHLHRMEGRNATLFVDQNRIWNVNLKICLNKQFTLVDGWTKFCADNNLKLGDVCVFILNKCKGTVSFQVVIFSLEKDMKTPYFQGSTNKLC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01371 334 CDD B3_DNA 220 316 IPR003340 GO:0003677
Trre1g01371 334 ProSiteProfiles B3 DNA-binding domain profile. 220 318 IPR003340 GO:0003677
Trre1g01371 334 PANTHER B3 DOMAIN-CONTAINING 14 170 - -
Trre1g01371 334 SUPERFAMILY DNA-binding pseudobarrel domain 214 316 IPR015300 -
Trre1g01371 334 SMART B3_2 221 318 IPR003340 GO:0003677
Trre1g01371 334 SMART B3_2 16 109 IPR003340 GO:0003677
Trre1g01371 334 CDD B3_DNA 15 106 IPR003340 GO:0003677
Trre1g01371 334 Gene3D - 200 319 IPR015300 -
Trre1g01371 334 Gene3D - 10 109 IPR015300 -
Trre1g01371 334 Pfam B3 DNA binding domain 220 310 IPR003340 GO:0003677
Trre1g01371 334 SUPERFAMILY DNA-binding pseudobarrel domain 15 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01371 Trre-Chr1 10394761 10396651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01371 16 334 B3 DNA Binding Superfamily AT3G18990 25.978 4.29e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01371 B3 1.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01371 - - tpra:123894507 489.574