Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01368 ATGGATCCTCAAAACCCAAACCAAAACCCATCTTTTCCTTCAGCACCACCTGGTATTCCTATCCCAGTTCCAATCCTAGCTCCGAAGCAAGAGCCTCTTGACGAACCACTTCAACCGAACCTAAACAATCTTCCAAACCTCAATCTGAACCTCAATTTCAACCTCGATAACATTTCTCAAGAACAAACCCTAACTTATTCCGATGATTTTCGTCGTGTGGCTGAGATTTTCCGTAACAATTTCACCACAGGGCTTCAACAAATTCAAAACGACGTCGTTGATGATGATGATCCAAATTCACGCGCCATCGTTCCTGTTCCAGACGCGCCGCGAAATGATGATAATAGTAATAATAACAATAACGCTCCGGCGGGTGAAGTTGCGGCGCAGAGACTTCAACGGAGATATAAAGAGCTTGTTCGTGTTTCAGATCTTGGTTTACCGGATCAACGACAGTTTCGTGAGATTGTTAGAAGAACGAGAATGGTTTATGATTCAATTCGGGTTTTGGCTATTGTGGAAGAAGAAAATAGAGTTGATGTTCGGAGATCGAGAAGTGATTTGAGAGCTTCTGCTATAATGAGGAGTCATGGTTTGTGGCTGAATCGCGATAAGAGAATCGTTGGCGCGATTCCTGGGGTTTGTATTGGTGATGTTTTTCTTTATAGAATGGAATTAGTTGTGGTTGGTTTACATGGTCAACCACAAGCTGGAATTGATTATTTACCTGGTAGTATGTGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCGGGTGGTTATGAGGACGATGTTGATCAAGGTGATGTTATTATTTATTCGGGTCATGGTGGTCAGGATAAGAATTCGAGGCAAGTTTTTCATCAGAAGTTGGAAGGTGGGAATCTTGCTATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGTGGTGTTCGGTGTGAAGGTACTTCTTCGGCTTCGGGTAAGGTTTATGTTTATGATGGACTGTATAGGATTGTTGAATGTTGGTTTGATGTTGGTAAATCGGGTTTTGGTGTATATAAGTATAAGTTATGGAGGATTGACGGGCAAGCCAAAATGGGTAGTTCGGTTTTGAAGGAGGCTGTTATGCTTAGGAGAGATCCTTTATGTTTTAAACCCATGTGTGTTTTATCGCTTGACATTGCCAATGGGAAGGAGAGTGTTGGTATTAGGCTATTTAATGATATTGATAGGAATCATGATCCAATGTGTTTTGAGTATCTTCCGAAGGCTACTTTTCCACAGTTCGTGTTTCATCAGAGTGGGAAGACGACAGGGTGTGAATGTGTGGATGGTTGTGCGGAGGGATGCTTTTGTTTCATGAAGAATGGAAATGAGTTTCCATATAGTCAAAGCGGGCTTCTCTTGAAAGGGAGGCCGTTACTTTTTGAATGTGGTCCTTTTTGCCGTTGTCCGCCTCACTGTCGTAACCGTGTTACGCAAAAAGGTCTTAAACACAGGTTCGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAAGCTGGCGCATTCATATGCGAGTACACTGGGGTTGTTTTGACTAGGGAGCAAGCACAAATTTTTACCATGAATGGCGATTCATTGATATATCCGAGCCGACTTTATGTTATGCTGAAGCTGAGTTTTGGGCATGGTGTACTGAGATATTTAAATTTTTGCAGAAGAACTTTCATCAGATTTCAACCTCAACAATTCACAAGGAACGAGTATATTTGCTGGTTTTATCCAACCCTTGTTTGCTAG 1800 0.42 MDPQNPNQNPSFPSAPPGIPIPVPILAPKQEPLDEPLQPNLNNLPNLNLNLNFNLDNISQEQTLTYSDDFRRVAEIFRNNFTTGLQQIQNDVVDDDDPNSRAIVPVPDAPRNDDNSNNNNNAPAGEVAAQRLQRRYKELVRVSDLGLPDQRQFREIVRRTRMVYDSIRVLAIVEEENRVDVRRSRSDLRASAIMRSHGLWLNRDKRIVGAIPGVCIGDVFLYRMELVVVGLHGQPQAGIDYLPGSMCSNGEPIATSVIVSGGYEDDVDQGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRCEGTSSASGKVYVYDGLYRIVECWFDVGKSGFGVYKYKLWRIDGQAKMGSSVLKEAVMLRRDPLCFKPMCVLSLDIANGKESVGIRLFNDIDRNHDPMCFEYLPKATFPQFVFHQSGKTTGCECVDGCAEGCFCFMKNGNEFPYSQSGLLLKGRPLLFECGPFCRCPPHCRNRVTQKGLKHRFEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQIFTMNGDSLIYPSRLYVMLKLSFGHGVLRYLNFCRRTFIRFQPQQFTRNEYICWFYPTLVC 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01368 599 SMART preset_2 390 482 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g01368 599 Pfam Pre-SET motif 393 490 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g01368 599 SUPERFAMILY SET domain 382 546 IPR046341 -
Trre1g01368 599 Gene3D SET domain 367 566 IPR046341 -
Trre1g01368 599 MobiDBLite consensus disorder prediction 91 125 - -
Trre1g01368 599 ProSiteProfiles YDG domain profile. 209 358 IPR003105 -
Trre1g01368 599 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 95 545 - -
Trre1g01368 599 MobiDBLite consensus disorder prediction 9 29 - -
Trre1g01368 599 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g01368 599 Gene3D - 206 366 IPR036987 -
Trre1g01368 599 SMART G9a_1 204 362 IPR003105 -
Trre1g01368 599 MobiDBLite consensus disorder prediction 111 125 - -
Trre1g01368 599 Pfam SAD/SRA domain 208 362 IPR003105 -
Trre1g01368 599 SUPERFAMILY PUA domain-like 190 371 IPR015947 -
Trre1g01368 599 ProSiteProfiles Pre-SET domain profile. 437 495 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01368 Trre-Chr1 10340787 10345589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01368 156 531 Su(var)3-9 homologs AT1G73100 40.369 4.85e-86 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01368 K11420 - gmx:100795514 737.643