Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01367 ATGAAACCCGAGTTATACGAAATCTCCGACGACGAATGGGAAAATCACTCTTTCAAACCCTCACGAGTCCTCAAACGACCTCGTTCTCCACCGCCGCCTCTCGACTCCTTCGCTTATAAACCTCCTTCCCAACCCCAACCCGAACCCGTTGCCTCCGACGACGACGATTGCGTTGAAATCAGTCAAATAACCGATAATAATAACAACAACAACTTTGAATGTCTCGATGATTTAGAAGATGCTGATGTGGATGATGTTGAAGCGGCTCCAACTGCAAGACCTGGAAGGAGGTTTATAATCGACGATGAGGATGAAGAGGATGGTCTCGGCGGTGGTGGTGATAATGTTGATGTGTTTGATATTGATTCAACGGAAGATGAATTGGAGGTTGAAATTGATGAAGGGAATGAAGGTGATTTGGTTGGTAGGGCTTTGCAAAAGTGTGCGAGGATTTCTGTCGAGTTGAAGGGAGAGTTGTTTGGGTCTTCTGGAGCTGCTTGTGAGAGATATTCTGAGGTGGAATCTTCTTCAGTTAGAATCGTTACTCAGGATGATGTTGATGTTGCGTGTGGGTCTGAGGATTCGGATTTTCAACCTCTGTTAAAGCCCTATCAACTTGTTGGTGTTAATTTTTTGCTTCTGTTGTATCGGAAGGGTATTAAAGGAGCTATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACCTGCACAGTGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGGTGGTGTCCATCCTTTTCTGTTGTTCAATATCATGGGGCTACACGCACAGCATACTGCAAGGAATTGAACTCTCTGTCCAAGTCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAACGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGTTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCGAACCAACGCTTGATGCTGACAGGGACACCTCTTCAAAATGATCTACATGAGTTATGGTCTATGTTAGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGATTTAAAAAAGTTACTAAGTGCAGAAGATAGAGATTTAGTTAGTCGTATGAAGTCTATCTTGGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTAATGCAACAACTTGTTCAAAAGACACAGCAGGTTCAATATGTCATAATGGAAAAGCAACAGGAACATGCTTACAGGGAAGCCATCGAAGAGTATCGCGCTTTTTCACAAGCTCGGTTAACAAAATGTTCTGATATGAACTCAAAAAGTATTCTTGAAGTTCTTCCTCGACGGCAAATAAATAATTATTTTGTTCAGTTCCGGAAGATAGCAAACCACCCCTTGTTGATACGGAGAATTTATAATGATGAGGATGTTGTTCGCTTTGCTAGGAAGCTGTATCCAATAGGTGCTTTTGGCTTTGAATGTACTATGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGATTTCTCCATTCACCGGCTTTTACTTCATTATAGTATCAATGATAGAAAGGGGATCCTTTCAGATAAATATGTTATGCTTTCTTCAAAATGTCGGGCTTTAGCAGAACTTCTTCCGTCACTAAAGAAAGGTGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCTTTAGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGACAAACAATAGTCGACACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCCGATACAGTTGTGATTCATGACATGGATTTTAATCCCCAGATTGATAGACAAGCCGAAGACCGCTGTCATCGAATTGGACAAACAAAGCCTGTAACCATTTATAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAGTCCACAGACGAGATCAAAGAAGGGGACATGCCTGAGAAGACCATGGGAGAGATATTGTCCGCAATTTTGTTAAAATATTGA 2256 0.4149 MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLDSFAYKPPSQPQPEPVASDDDDCVEISQITDNNNNNNFECLDDLEDADVDDVEAAPTARPGRRFIIDDEDEEDGLGGGGDNVDVFDIDSTEDELEVEIDEGNEGDLVGRALQKCARISVELKGELFGSSGAACERYSEVESSSVRIVTQDDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIKGAILADEMGLGKTVQAITYLTLLNHLHSDSGPHLIVCPASVLENWERELKRWCPSFSVVQYHGATRTAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDRDLVSRMKSILGPFILRRLKSDVMQQLVQKTQQVQYVIMEKQQEHAYREAIEEYRAFSQARLTKCSDMNSKSILEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFARKLYPIGAFGFECTMDRVIEELKSYNDFSIHRLLLHYSINDRKGILSDKYVMLSSKCRALAELLPSLKKGGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESTDEIKEGDMPEKTMGEILSAILLKY 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01367 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 427 IPR027417 -
Trre1g01367 751 Pfam SNF2-related domain 220 507 IPR000330 GO:0005524|GO:0140658
Trre1g01367 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 392 IPR014001 -
Trre1g01367 751 PANTHER SNF2/RAD54 HELICASE FAMILY 197 727 - -
Trre1g01367 751 MobiDBLite consensus disorder prediction 25 48 - -
Trre1g01367 751 CDD SF2_C_SNF 567 700 - -
Trre1g01367 751 Gene3D - 437 512 IPR027417 -
Trre1g01367 751 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g01367 751 FunFam Protein CHROMATIN REMODELING 19 isoform A 172 450 - -
Trre1g01367 751 Gene3D - 559 745 IPR027417 -
Trre1g01367 751 Pfam Helicase conserved C-terminal domain 577 689 IPR001650 -
Trre1g01367 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 730 IPR027417 -
Trre1g01367 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 580 730 IPR001650 -
Trre1g01367 751 MobiDBLite consensus disorder prediction 1 55 - -
Trre1g01367 751 SMART helicmild6 606 689 IPR001650 -
Trre1g01367 751 SMART ultradead3 197 402 IPR014001 -
Trre1g01367 751 CDD DEXHc_Snf 201 394 - -
Trre1g01367 751 Gene3D - 201 436 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01367 Trre-Chr1 10312919 10321884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01367 221 740 RAD5 or RAD16-like Gene Family AT5G22750 26.761 3.84e-46 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g01367 SNF2_N 3.4e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01367 K14439 - gmx:100806323 1220.68