Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01365 ATGGCTGCTTCTTCATCATCTACACCTTTCTTGGAAATTAGACAAGAAAATCAAAGTCAGATTACTCAACAACATCAATCTTCAACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATATCCAGATGCAGAAGTGATAGCACTATCTCCCAAGACCTTAATGGCAACAAATAGATTTGTATGTGAAGTGTGTCAAAAAGGATTTCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAACTAAAGCAAAAGAGTAACAAAGAGCCAAAAAGAAAGGTTTATTTGTGTCCTGAGCCATCTTGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGATAGTTTCATCACACATAGGGCTTTTTGTGATGCATTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTAGCAACTCATCTATTTTCCACAAGCCACATGGGTTTAACCCTAAACCAAAATCAACAACCTTCCACAAACAACATCTTAACCCTAGGTAATATTCCTTGTACACCAAAATTTGAACATCATTTAATATCACCTTTGCATGCATCATCATCATCATTTGGTCAACAACAACAACAATCACCACAACAACAATCAATGTCTTCTTCACCTTTTTTCATAACTGATCCAAATCAAACTTTTCAACAAGATCATCTTCAAGGACCATTCTCAAATAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGAAATACCAACAATAATACATCTTCTTCATCGGTATCGCCGTTTAACCTAAGCTTCTTTCCAAATAGTAACAACACTTTGCATGATCAATTCAATAATATAAGTGAAGCTCATCATCATCAAAATGATCATCATCATCATGAAGGTTTTTCTTCACTTTTTGGTAATTCATCAATGCAACAAGAGAACATGTTGTCATCGGCGCCTCACATGTCGGCAACTGCATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACAACATCAACTATCAATAACAATGGTGTAGAATCTAATGAAGGAATAAGATCAAGCATGGAAAATGAACAAAATAATCAACATCTACATGGTTTGATGAACTCTCTTGGGAATGGAAGCACTTCAATATTTGATAATAACAATAACCTTGGTCAGTTTCATAATGTTGAGGAGAACAAAAAGATGTCACAACAAAGTCTTGGTAATTTGTGCTTTGGAGGGTCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTAATAGTACTAGTGGTGGTGGTGGTGGATTTTCACAAAGAGATCAACAATTACACTCAATGAGTGCAATGAACAACATGGATCCTAAAATGGAATCAACACAAGGGAACCAACCTTTTTGA 1611 0.3687 MAASSSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTSHMGLTLNQNQQPSTNNILTLGNIPCTPKFEHHLISPLHASSSSFGQQQQQSPQQQSMSSSPFFITDPNQTFQQDHLQGPFSNKQLHLHHGLMQLPDLQGNTNNNTSSSSVSPFNLSFFPNSNNTLHDQFNNISEAHHHQNDHHHHEGFSSLFGNSSMQQENMLSSAPHMSATALLQKASQIGSTTSTINNNGVESNEGIRSSMENEQNNQHLHGLMNSLGNGSTSIFDNNNNLGQFHNVEENKKMSQQSLGNLCFGGSDKLTLDFLGVGGMVRNMSNSTSGGGGGFSQRDQQLHSMSAMNNMDPKMESTQGNQPF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01365 536 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Trre1g01365 536 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Trre1g01365 536 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Trre1g01365 536 MobiDBLite consensus disorder prediction 260 295 - -
Trre1g01365 536 Gene3D Classic Zinc Finger 126 205 - -
Trre1g01365 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Trre1g01365 536 SMART c2h2final6 148 168 IPR013087 -
Trre1g01365 536 SMART c2h2final6 72 94 IPR013087 -
Trre1g01365 536 SMART c2h2final6 113 143 IPR013087 -
Trre1g01365 536 FunFam protein indeterminate-domain 12-like 51 119 - -
Trre1g01365 536 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 510 IPR031140 -
Trre1g01365 536 MobiDBLite consensus disorder prediction 1 41 - -
Trre1g01365 536 Gene3D Classic Zinc Finger 55 120 - -
Trre1g01365 536 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01365 Trre-Chr1 10298233 10303106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01365 42 507 IDZ Gene Family AT2G02070 47.438 3.37e-123 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g01365 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01365 K25870 - gmx:100806198 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01365 1 10298233 10303106 Trre1g01365 1 10298233 10303106 ECH