Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01364 ATGGCAGCATCATTTTCAGCTGCTTCTTTCTTTACAATCACTGAAGAAGATCAGAATCAGATGAATCAACAACAAAATTCTTCAACACCATCATCATCAACAACTCCAACTGCACCACCACTTCAAAAGAAAAGAAGAAACCAACCAGGAACACCAAATCCAGATGCAGAAGTGGTAGCACTATCACCCAAGAGCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTCCAAAGAGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAACTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATGTGTGTCCTGAGCCAACATGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACCTCACTGGAATTAAGAAACATTTTTTTAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAAGGAGTATAGATGTGATTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATCACACATAGAGCCTTTTGTGATGCACTTGCTGAAGAAAGTTCAAGACAACCACAATTACCAAACCAAATCACAAATACTACTTCCATTAATAATTCTCACCTATTTGGAAACATTAGCAACAACATATCCTTAGCCTTATCTCAAATTTCTCCACAACAAATCTCTTCTATCCATAACCAAAACGACAACAACCAATCCACTGAAATCTTGCGTTTTGGCAACACAAGAACTTCACAATTTAACCAAAACATTCTATCTACACCCCCACAACAAGCCCTTCACACCCCTCCATTTAATTTCACCACACAACAACAAAACCAAAATTACCATAATGACCATCAATCTCAAACATTCCAAGGACTAATATCATTGTCTCAACTCAACAACAACAACAACAACAACAACATGTTTTCTGAAAATTTCAACAATGAAGGGACAAATAATTTCTTTTCTGAAAATTCTATAATGTGTGATCCTAATCATCCAAACCAAACAAGTCCTATCTCTCCTCACATGTCAGCAACAGCTTTGCTACAACAAGCTTCTCGAGTGGGTTCAACTTCAAGCAATAACAACAACAATGTTTCTTCATTAACAAGAAACATTGGTGTTTCTTCATCTTTAGAAACAAAAGTTGTTGGTGGTGGTTATGATGGACTAAGTACTAGAGATTTTCTTGGAGTTGGACAAATAGTTATGAGAAATGTGAATGGAGGAGTTGGTCAAAGAGGTCAACGCAACTTGGAAACAGAGAAAAATGGATATTTTGGTGTGGGAGGTAACTTTGACAAGTTTGAATGA 1371 0.3742 MAASFSAASFFTITEEDQNQMNQQQNSSTPSSSTTPTAPPLQKKRRNQPGTPNPDAEVVALSPKSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAEESSRQPQLPNQITNTTSINNSHLFGNISNNISLALSQISPQQISSIHNQNDNNQSTEILRFGNTRTSQFNQNILSTPPQQALHTPPFNFTTQQQNQNYHNDHQSQTFQGLISLSQLNNNNNNNNMFSENFNNEGTNNFFSENSIMCDPNHPNQTSPISPHMSATALLQQASRVGSTSSNNNNNVSSLTRNIGVSSSLETKVVGGGYDGLSTRDFLGVGQIVMRNVNGGVGQRGQRNLETEKNGYFGVGGNFDKFE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01364 456 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Trre1g01364 456 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Trre1g01364 456 SMART c2h2final6 148 168 IPR013087 -
Trre1g01364 456 SMART c2h2final6 72 94 IPR013087 -
Trre1g01364 456 SMART c2h2final6 113 143 IPR013087 -
Trre1g01364 456 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Trre1g01364 456 MobiDBLite consensus disorder prediction 1 49 - -
Trre1g01364 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Trre1g01364 456 FunFam protein indeterminate-domain 12-like 51 119 - -
Trre1g01364 456 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Trre1g01364 456 Gene3D Classic Zinc Finger 126 206 - -
Trre1g01364 456 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 428 IPR031140 -
Trre1g01364 456 MobiDBLite consensus disorder prediction 1 57 - -
Trre1g01364 456 Gene3D Classic Zinc Finger 53 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01364 Trre-Chr1 10275017 10279514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01364 27 419 IDZ Gene Family AT5G66730 48.668 2.16e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g01364 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01364 K25870 - gmx:100807789 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01364 1 10275017 10279514 Trre1g01364 1 10275017 10279514 ECH