Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01358 ATGGAAAAATTAGCTCCTCCTCTTCTTCCCCTTCATCCTCCGATGTTATCAAATCCATTTTATAATTCATCAAATAACAAAAAACGCGATCTATCATACGACGTCGTTCACATCCCAAACGACAATTGGAACCCTAAAGAATGGAATTGGGATTCAATTCGATTCACCGCCAAATCCACTGTCTCACAACAACAGCACAGCGAAGAAACTCTCAAATTGAATCTCGGCGGCGTAAGCGGCGGCGGAGTTGCAAACAGAGCAAACAAAAGAGTACGATCAGGATCTCCAACAGCATCATATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTATCAAAAGCTAAGGATTATCATCGTCGTCATAAAGTGTGTGAAGCTCATAGTAAAGCTTCGAAAGCGTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTTTATTGGAATTTGATGAAGGAAAACGGAGTTGTAGAAGGAGACTTGCTGGACATAATCGTCGCCGGAGAAAAACGCAACCGGATGAGGTTGCTACTTCTTCTTCTCCTCCGTTGAATCAGCAAGTTGTGGCGGCTGCTGCTAATTTGGAAATTTTTAATTTGTTGACTGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAACAGCTTGCACAGATTCTGAATAGGATCCCTTTACCTGCTGATCTTACAGCGAAGTTGCTGGACGTTGGCAATAACTTGAATGGGAAAAATGATACCATGCCAATGCAAACTTCATCTCCGTATCATCATCGTGATGATCAACCGAACAGTGTGCCTTCTGCCCCGTTAACTATGGACTTACTTGCTGTTCTTTCCACCACTCCATCCACTCCTGCTCAAAATGGCGGCACCAAGTCCACAACTAGTGCTGATCAGATGAGAGAACAACAATTCACTTCAGTTGGTAGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCGGATTCCCAGGAGGATGTTCGTGTTAATTTGCCACTGCAACTTTTTAACTCCTCACCAGAAGATGACAACCGGTCAAAAAAGCCATCTTCGCGAAATTATTTTTCATCTGAAAGTAGTAACCCCGTGGACGAGATGTCGCCGTCGTCATCTCCTAATGTTGTGGAGATGAATTTTGGTTTGCAAGGTGGGAATGGGGGTCTCAATTCTACTAGTATTACGACTAGAATGGGGGTCAATACAAATAAGGAAACTAGTCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAGTCAAATAACATGATCCAACAAACTAGTTCAATTCAAAGTGTTCCGTTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACTGGGAGAATAATGTTTAAATTATTTGACAAGCATCCTAGCCATTTCCCAGGAACATTGCGATCACAGATTTACAATTGGCTTTCTACTCGACCATCAGACTTGGAAAGTTACATAAGGCCCGGCTGTGTCGTCCTATCAATTTATGCTACAATGTCTTCTGTTGCCTGGGCGCAACTAGAAGAAACCTTCCTCCAACGTGTTCATTCTTTAATTCATAACTCAGATTTTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGAAGTCAGTTAGCATCGCACAAAGATGGAAATATACGCATGTGTAAGCCTTGGGGAACATGGAAGTCTCCAGAGTTGATATCAGTGTCCCCTTTAGCGATTGTTAGTGGACAAGAAACCTCTCTGTCATTGAAGGGAAGAAACCTGTCTGCTCCTGGCACAAAGATTCATTGCACTGGTGCTGACGGTTACACATCATCAGAAGTTATAGGATCTGAAAATCCTGATATGATCTATGATGAGATAAAGTTGGGTGGTTTTAAAGTTCAGAATACATCTCCCGGTGGTGCTCTAGGTCGCTGTTTCATCGAGGTTGAAAATGGTTTCAAGGGTGACTGTTTTCCAGTGATAATAGCCAATGCATCCATTTGCCAGGAATTGAGACCGCTCGAGTCTGAATTTGACAAAGATGAAATAGTATGTGATGCCATTTCAGAGGAACATGAATATAATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTTTGAATGAGCTTGGCTGGCTGTTTCAAAGAGAAAGGTTCTCAAATGTGCACGAGGTTCCAGATTATTCACTTGACAGGTTCAAATTCGTACTAACGTTTTCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTGGATATACTGGTTGATAAACACTTCGAAGGAGAAAGGTTGTCAACGGGGTCAATGGAGATGCTCAAAGCAATCCAACTCCTAAATAGAGCAGTGAAAAGAAAGTACATAAGCATGGTTGATTTGCTCATCCACTATTGTATACCAAGCAAATACGGTACATCCAAGAAATATATATTTCCACCAAATCTTGAGGGCCCTGGTGGTATTACTCCCTTGCATTTGGCTGCATCTACATCAGATTCAGAGGGTGTTATTGACTCTCTAACAAATGATCCACAAGAGATTGGGTTGAAGTGCTGGGAGACCCTCGTGGATGAAAGTGGGCAGACTCCACATGCCTATGCTGTGATGAGAAATAATTACTCTTACAATATGTTGGTTGCCCGTAAACGTTCTGATAGACAAAGAAGTGAAGTTGCAGTCAGAATTGACAATGAGATACTCCCATCACTCGGAGTTGAGCTTATGCAAAAGCGAATTAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCTATTGCAGAAGTTCGCTCCAAAAGAAAATTTTCCGGTTCACGGAGCTGGCTTCACACGCCATTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTCTGTGTTTGTGTGTTATTCCGTGGAACTCCTTTCGTAGGTTCAGTTGCACCCTTCAGGTGGGAAAACTTGGATTATGGCGCACTGTAA 3039 0.4212 MEKLAPPLLPLHPPMLSNPFYNSSNNKKRDLSYDVVHIPNDNWNPKEWNWDSIRFTAKSTVSQQQHSEETLKLNLGGVSGGGVANRANKRVRSGSPTASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQPDEVATSSSPPLNQQVVAAAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLAQILNRIPLPADLTAKLLDVGNNLNGKNDTMPMQTSSPYHHRDDQPNSVPSAPLTMDLLAVLSTTPSTPAQNGGTKSTTSADQMREQQFTSVGRERSSGSSQSPNDDSDSQEDVRVNLPLQLFNSSPEDDNRSKKPSSRNYFSSESSNPVDEMSPSSSPNVVEMNFGLQGGNGGLNSTSITTRMGVNTNKETSQSHSCTTIPLDLFKGSKSNNMIQQTSSIQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRSQIYNWLSTRPSDLESYIRPGCVVLSIYATMSSVAWAQLEETFLQRVHSLIHNSDFDFWRNGRFLVYSGSQLASHKDGNIRMCKPWGTWKSPELISVSPLAIVSGQETSLSLKGRNLSAPGTKIHCTGADGYTSSEVIGSENPDMIYDEIKLGGFKVQNTSPGGALGRCFIEVENGFKGDCFPVIIANASICQELRPLESEFDKDEIVCDAISEEHEYNFGRPKSRDEALHFLNELGWLFQRERFSNVHEVPDYSLDRFKFVLTFSVERNCCMLVKTLLDILVDKHFEGERLSTGSMEMLKAIQLLNRAVKRKYISMVDLLIHYCIPSKYGTSKKYIFPPNLEGPGGITPLHLAASTSDSEGVIDSLTNDPQEIGLKCWETLVDESGQTPHAYAVMRNNYSYNMLVARKRSDRQRSEVAVRIDNEILPSLGVELMQKRIKRVGDSCSKCAIAEVRSKRKFSGSRSWLHTPFIHSMLAVAAVCVCVCVLFRGTPFVGSVAPFRWENLDYGAL 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01358 1012 MobiDBLite consensus disorder prediction 295 410 - -
Trre1g01358 1012 Gene3D - 94 164 IPR036893 GO:0003677|GO:0005634
Trre1g01358 1012 MobiDBLite consensus disorder prediction 167 189 - -
Trre1g01358 1012 Pfam SBP domain 103 176 IPR004333 GO:0003677
Trre1g01358 1012 ProSiteProfiles Zinc finger SBP-type profile. 100 177 IPR004333 GO:0003677
Trre1g01358 1012 SUPERFAMILY SBT domain 101 182 IPR036893 GO:0003677|GO:0005634
Trre1g01358 1012 MobiDBLite consensus disorder prediction 295 338 - -
Trre1g01358 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 48 791 IPR044817 GO:0003677
Trre1g01358 1012 FunFam Squamosa promoter-binding-like protein 14 94 164 - -
Trre1g01358 1012 MobiDBLite consensus disorder prediction 368 410 - -
Trre1g01358 1012 MobiDBLite consensus disorder prediction 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01358 Trre-Chr1 10221912 10227401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01358 20 1012 SBP-box Gene Family AT1G20980 51.380 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre1g01358 SBP 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01358 - - gmx:100819004 1368.6