Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01353 ATGGATTCTCCAACTTTTAACTTATTAGCTCTTATCTTTTTTTTCCTCTTCATCTTTGTGGCACTCAAGAAAAAAGGGTCACCTCCAAACCTGCCCCCAGGACCATGGAAGCTACCTATTATAGGAGACATACATCATCTAATTACATCTACACCACATCAAAAATTAAGAGACTTGGCCAAAATACATGGACCTTTGATGCACCTACAACTTGGAGAGATCTTTGCAATTGTTGTTTCATCAGCAGAGTATGCTAAAGAGGTACTTAAAACACATGATGTTATATTTGCATCTAGGCCTAAAATTGTTGCAGTAGATATATTATTATATGGATCCACAGATATTGCTTTTTCACCTTATGGAAATTATTGGAGACATCTAAGAAAAATATGCACAATTGAGCTTCTTACTCAAAAACGTGTCAATTCATTTCAACCTATAAGAGAAGAAGAACTCACAAATTTAATCAAAAGGATTGATTCACAACAAGGGTCATCCATAAACATCACTCAAGCTATACTTGAATCAATAATGAGTATCACTACAAGGTCTGCATTTGGAAACAAATGCAAAGGCACAGAACAACTTGTATCATTGGCAAAGGGAGAATCAGTTGCAGGAGGTTTCGACATAGCGGAATTGTTTCCTTCTGTTAAATGGCTTCCACTTGTTTCTGGTTTGAGACCTAAACTTGAGAGGTTGCATAGAGAAATTGATCAAATACTAGAAGACATTATCATTGAACATAAAGAAGCAAAGTCAAAAGTAGGTGAAGGTGAAGTTGGAGAAGATCTTGTAGATGTTCTTCTAAAATTTCAAAATGGTAATCATAATGATCAAGATATATGCTTAACTGACAACAATATCAAGGCTATAATCTTGAACATGATTGGTGCCGGAGGCGAAACAACATCTACTACCGTAATTTGGGCAATGGCAGAGTTGGTAAGGGATCTAAGAGTGATGAAGAAAGCACAATATGAGGTGAGAGAAATATTCAACAAGAAAGGAATTAATGAAAACAATACAAATAAACTAAAATATTTGAAATTAGTTGTGAAAGAGACTCTAAGGTTACACCCTCCAAGTCCACTTTTACTTCCAAGAGAATGTGGACAAGCATGCGAGATTGGTGGGTATCATATACCAGCCAAAAGTAAGGTTATGGTGAATGCATGGGCAATTGGAAGAGATCCAAAGTATTGGTCTGAACCAGAGAGGTTTTATCCAGAGAGATTTGTTGATAGCTCTATTGACTACAAAGGGACTAATTTTGAGTACATTCCTTTTGGCGCTGGAAGAAGAATATGTCCGGGAAGTACATTTGGTTTGATAAGTGTTGAGTTGACACTTGCATTGTTGTTATATCACTTTGATTGGAAGCTTCCCAATGAAATGAAAGGTGAAGATTTGGACATGGCTGAACAATTTGGAGCTAATGTTAAAAGAAAAAATGACTTGTACTTGATACCCAATGCTCCTCTTCCTTCTATGGTATATAACCTTTGA 1509 0.3618 MDSPTFNLLALIFFFLFIFVALKKKGSPPNLPPGPWKLPIIGDIHHLITSTPHQKLRDLAKIHGPLMHLQLGEIFAIVVSSAEYAKEVLKTHDVIFASRPKIVAVDILLYGSTDIAFSPYGNYWRHLRKICTIELLTQKRVNSFQPIREEELTNLIKRIDSQQGSSINITQAILESIMSITTRSAFGNKCKGTEQLVSLAKGESVAGGFDIAELFPSVKWLPLVSGLRPKLERLHREIDQILEDIIIEHKEAKSKVGEGEVGEDLVDVLLKFQNGNHNDQDICLTDNNIKAIILNMIGAGGETTSTTVIWAMAELVRDLRVMKKAQYEVREIFNKKGINENNTNKLKYLKLVVKETLRLHPPSPLLLPRECGQACEIGGYHIPAKSKVMVNAWAIGRDPKYWSEPERFYPERFVDSSIDYKGTNFEYIPFGAGRRICPGSTFGLISVELTLALLLYHFDWKLPNEMKGEDLDMAEQFGANVKRKNDLYLIPNAPLPSMVYNL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01353 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Trre1g01353 502 Pfam Cytochrome P450 32 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 Gene3D Cytochrome P450 24 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 CDD CYP71-like 63 487 - -
Trre1g01353 502 SUPERFAMILY Cytochrome P450 32 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 FunFam Cytochrome P450 71D8 24 491 - -
Trre1g01353 502 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01353 502 PANTHER OS08G0105600 PROTEIN 55 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01353 Trre-Chr1 10165860 10167903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01353 8 492 Cytochrome P450 AT3G26300 43.863 5.50e-135 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01353 - - gmx:102665189 705.286