Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01352 ATGGATCCCCAAATTTTTAACTTAATTGTCCTTGCCTCCTTTTTCTTGTTCATGCTTGTGGCACTGAAAATTGGGAAGATTCTCAACAAAAAAGGGTCACCTCCAAACCTACCCCCAGGACCATGGAAACTACCTATTATAGGACACATACATCATCTAATTACCTCTACACCACATAGAAAATTAAGTGACTTGGCCAAAATATATGGACCCTTGATGCACCTACAACTTGGAGAGATATCTGCAATTGTTGTTTCATCAGCAGAGTATGCTAAAGAGATACTTAAAACACATGATGTCATATTTGCATCTAGGCCAAAACTTCTAGCTACAGAAATATTATCATATGGTTTCACAGATATTGCTTTTTCACCTTATGGAAATTATTGGAGACAGCTACGAAAAATATGCACAATGGAACTTTTCACTCAAAAACGTGTGAATTCATTCGAGCCAATAAGAGAAGAAGAGCTCACCAATCTTATCGAAAGGATTGATTCGCAGCAAGGATCGATCATCAACATCACTCAACTTGTAGTTTCATCAACATTTAATATCATTGCAAGGGCTGTGTTTGGCAACAAATGTAGAGTCCAAGAGTTTGTATCTTTGGAAAATGGAGAATCAATTGCAGGAGGTTTTGACATAGCAGAATTGTTTCCTTCGGCTAAATGGCTTCAACGAGTTTCTGGTTATAGGCCTAAACTTGAGAGGTTTCATAGGCAAATCGATCAGATACTAGAAAACATCATCATTGAACATAAAGAATCAAAGTCAAAAGAAGGTGAAGGTGATGGTGATGTTGGAGAAGATCTAGTAGATGTTCTTCTAAAATTGCAAAGTGGTAATGATCAAGATATATGCTTAACTGACAACAATATCAAGGCTATAATCCTGAACATCTATGGTGCTGGAGGTGATACATCGGCTTCGACCATAGTTTGGGCAGTAGCAGAATTGGTAAGGGATCCAAGAGTAATGAAGAAAGCACAAGATGAGGTCAGAGAAATATTCACCATGAAAGGAATTGTTAGTGAAAACTGTATAAATGAACTCAAATATTTGAAGTCGGTTGTGAAAGAAACGCTAAGGTTACACCCTCCGGGTCCTCTTTTACTTCCAAGAGAATGCGGACAAGCGTGTGAGATTGATGGGTATCATATACCAATCAAAAGCAAGGTGATAGTGAATGCCTGGGCAATTGGAAGAGATCCAAAATATTGGACCGAACCAGAGAGATTTTATCCAGAGAGATTCATTGGTAGCTCTATTGATTACAAAGGGAGTAATTTTGAGTACATTCCTTTCGGCGCAGGAAGAAGAATATGCCCAGGCAGCACATTTGGTTTGATAAATGTTGAGATGGCACTTGCATTGATGTTGTATCACTTCGATTGGAGACTTCCCGATGGAATTAAAGGTGAGGACTTGGACATGACGGAGCTATTTGGAGCGACCATCAAACGAAAAGATGACTTGTATTTGATACCTACGGCTTATCATCCTTCTGTGGCAATATAA 1521 0.3872 MDPQIFNLIVLASFFLFMLVALKIGKILNKKGSPPNLPPGPWKLPIIGHIHHLITSTPHRKLSDLAKIYGPLMHLQLGEISAIVVSSAEYAKEILKTHDVIFASRPKLLATEILSYGFTDIAFSPYGNYWRQLRKICTMELFTQKRVNSFEPIREEELTNLIERIDSQQGSIINITQLVVSSTFNIIARAVFGNKCRVQEFVSLENGESIAGGFDIAELFPSAKWLQRVSGYRPKLERFHRQIDQILENIIIEHKESKSKEGEGDGDVGEDLVDVLLKLQSGNDQDICLTDNNIKAIILNIYGAGGDTSASTIVWAVAELVRDPRVMKKAQDEVREIFTMKGIVSENCINELKYLKSVVKETLRLHPPGPLLLPRECGQACEIDGYHIPIKSKVIVNAWAIGRDPKYWTEPERFYPERFIGSSIDYKGSNFEYIPFGAGRRICPGSTFGLINVEMALALMLYHFDWRLPDGIKGEDLDMTELFGATIKRKDDLYLIPTAYHPSVAI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01352 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Trre1g01352 506 Gene3D Cytochrome P450 23 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PANTHER OS08G0105600 PROTEIN 61 502 - -
Trre1g01352 506 CDD CYP71-like 69 493 - -
Trre1g01352 506 FunFam Cytochrome P450 71D8 30 497 - -
Trre1g01352 506 Pfam Cytochrome P450 38 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g01352 506 SUPERFAMILY Cytochrome P450 38 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01352 Trre-Chr1 10162258 10164104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01352 16 497 Cytochrome P450 AT3G26310 42.369 1.85e-135 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01352 - - gmx:102665189 718.768