Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01334 ATGGAACAAGACGATGACTTCAACAACAACAACAACAGTAACCACAGCGACAACAAAAACAAAATTGGCGATGATGAAATATTTGTATCTAAATCAAAAGGAGAAACTTTTTTTGATTTTTCACCCAAAAAAAGCATAGCTGAGAGAAGAGGTTTCAATAATAATGTTGCAAAGATCAACACAAGAATTTCTCATTTTGGTGCAACAACCCCTTTGGTTTCTCCTGCAGTTCAATCAGCACGTCTCACAATACCACCTGGAATTAGTCCAACTGCTTTGCTTGAATCCCCAATCATGCTTCCTAATTCTATGGTCATGCCGTCTCCCACGACCGGGAGTTTTGCCATGCTTCCACCTCTAACTGATGAAAGATCAATGCTCACTTCTGTCACACATGAACAAAGGAAATTAGATGTGCCTGCAGCCTCTGACATTGCTTCATCTTTCAAAATCAAGCCTATAGCCAATTTGGATCCTAATTCTTTGTCTCCATGTTATGATTCTCTTAATCAGGTTTCTAGTAATTTTCACATGATGACTCAAGGAGATAGAGACAACCAAATGCTTTTTGAAGATCAACAAATGTTAGATTTTTCATTATCAGAAGATTTTTCAAATGACTATTCAGCTAGAAATAGTGGAGTTCATGTTGATGTGCCAATCTCTTGTTCTGAAGAAACTAGTGATGAAAGCACTTTGCCTGAAAATTCTATCAATGATGATGATATAGAAGATGAACATAAAGAGATAACTCATGCAACAGGAGCAAAAACCTCAGAGGATGGTTATAATTGGAGAAAGTATGGACAAAAACAGGTGAAAGGTAGTGAATATCCAAGAAGCTACTATAGATGTACTCAGACTAATTGTCAGGTCAAGAAAAAGGTCGAAAGATCGCACGACGGCCATATTACAGAAATTATTTACAGGGGTAATCATAACCATTCAAAACCACATTCTACTTTGACTGAGCTTCTGGATTCAGATTCTACTGTTACTGAGCATTTGGATTCTACAAAGAGATTTCCATCTATTGGTATGTCGGAATCGAACAATGCTCCAGAGCATTCTTCTGGACAAGGTAATCATGATGGAGCCACTCAAGAAGTTTTACCACTTCGATGTGATGCTGAAGAAGCTGAATCAGAATCAAGAAAAAGGAAGAGAGAGAGCTATCCAGTTGAAACCATGGTACCATCGAGGGCTATTCGTGAGCCACGAGTGGTAGTGCAAGTTGAGAGTGAAGTGGACATACTCGACGATGGTTACCGTTGGCGAAAGTATGGACAAAAGGTTGTCAAAGGGAATCCAAACCCCAGGAGTTACTACAAATGCACAACTGCTGGATGTACTGTAAGGAAGCATGTGGAAAGGGCTTCACACAATCTAAAATATGTCATTACTACTTATGAGGGAAAACATAATCATGATGTTCCGACTGCAAGAAACAGCCATCATATAAGCGCAAACGATGTTGCTTTGTCTTCCGGTGGTGCTAATGTCCATGCCTCCGGTATCCCAAAGTCCGAAACTCATCAAACTCTTAGACCTCATTTTGATAGAAAACCAAATTTTACCAATGAGTTTCTGAGATCAAGCTTAATGGGAAGTTTTGGTAATGATATGAAGTTTGGATCTTCTTCAATATCCCAAATGAACTTTTCTACCTTGAATAGTATCATACCTTTTGGAGGCTATGGAACAAATCCTGATCATGCTGTTGGGCCTCAAGCTGGACCTATTGCCTCGATTTTCCCCGAGTTTCCAATGCCGCTACCAATGAATCTTCCCTCCTCTGGAATTAATTTCAACTATGCACAACCAATGAGTTCGGTCCGGTCTTACCTTTCAGGTCAAGTTATGATGGACATTGATGGAGGGTTCTTAAGGCCTAAACAAGAGCCATCTCTTGATCAAGCAAGTTCCTCGCGCGCTCCACCATCAACATCGCCATCACCATCACAATCCATTTATCAAAGTGCCATGCAAAATTTCTCTTCATAA 2004 0.3982 MEQDDDFNNNNNSNHSDNKNKIGDDEIFVSKSKGETFFDFSPKKSIAERRGFNNNVAKINTRISHFGATTPLVSPAVQSARLTIPPGISPTALLESPIMLPNSMVMPSPTTGSFAMLPPLTDERSMLTSVTHEQRKLDVPAASDIASSFKIKPIANLDPNSLSPCYDSLNQVSSNFHMMTQGDRDNQMLFEDQQMLDFSLSEDFSNDYSARNSGVHVDVPISCSEETSDESTLPENSINDDDIEDEHKEITHATGAKTSEDGYNWRKYGQKQVKGSEYPRSYYRCTQTNCQVKKKVERSHDGHITEIIYRGNHNHSKPHSTLTELLDSDSTVTEHLDSTKRFPSIGMSESNNAPEHSSGQGNHDGATQEVLPLRCDAEEAESESRKRKRESYPVETMVPSRAIREPRVVVQVESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCTVRKHVERASHNLKYVITTYEGKHNHDVPTARNSHHISANDVALSSGGANVHASGIPKSETHQTLRPHFDRKPNFTNEFLRSSLMGSFGNDMKFGSSSISQMNFSTLNSIIPFGGYGTNPDHAVGPQAGPIASIFPEFPMPLPMNLPSSGINFNYAQPMSSVRSYLSGQVMMDIDGGFLRPKQEPSLDQASSSRAPPSTSPSPSQSIYQSAMQNFSS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01334 667 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 194 504 IPR044810 GO:0003700
Trre1g01334 667 MobiDBLite consensus disorder prediction 627 667 - -
Trre1g01334 667 MobiDBLite consensus disorder prediction 1 17 - -
Trre1g01334 667 SUPERFAMILY WRKY DNA-binding domain 412 479 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 SMART WRKY_cls 419 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 SMART WRKY_cls 259 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 Gene3D WRKY domain 245 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 FunFam WRKY transcription factor 247 319 - -
Trre1g01334 667 MobiDBLite consensus disorder prediction 1 24 - -
Trre1g01334 667 ProSiteProfiles WRKY domain profile. 414 479 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 FunFam WRKY transcription factor 33 406 472 - -
Trre1g01334 667 SUPERFAMILY WRKY DNA-binding domain 255 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 ProSiteProfiles WRKY domain profile. 254 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 MobiDBLite consensus disorder prediction 635 667 - -
Trre1g01334 667 Pfam WRKY DNA -binding domain 420 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 Pfam WRKY DNA -binding domain 260 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g01334 667 MobiDBLite consensus disorder prediction 333 366 - -
Trre1g01334 667 MobiDBLite consensus disorder prediction 343 365 - -
Trre1g01334 667 Gene3D WRKY domain 406 472 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01334 Trre-Chr1 9968459 9973246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01334 46 482 WRKY Transcription Factor Family AT5G56270 41.082 8.74e-95 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g01334 WRKY 9.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01334 K18835 - gmx:100813723 695.656