Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01329 ATGTCTCCTCGTCCTTCTTTTCACAAAATCATTCTTCCAACAACCCTTCAATCTAGACAATTGAGGATTCCGGATAACTTTCTGAAGAAACATGGGTCCCATCTTTCGACTGCTGTAAACCTTACTGTTCCTGATGGCACTGTCTGGAGTATAGGATTGAAAAGGGTCGACAACAGAATTTGGCTTAGTGATGGTTGGCAGGATTTTGCTCAACGCTACTCCATTGGCATTGGATACTTTCTAGTATTCATGTATGAAGGGAATTCAACCTTCATCGTTCATATGTTTAATATGAGTACCGCTGAGTTAAACTATCAATCAACCATGCGAAGCCAAGGGCCTTGCTATTCAAATTATCATCCTATTTTTGAACAAATGGAAGATATTGATTCCTTTGAATTCCTTGATTCATCACCTTCAAACCTGATTCCTGGTGCTATGGATCAACTGACACCAGGGAAGAATCATACTCCATCATTGCAGAATTTGTTTAATGGCGGGTCTAAACTCAACCGCGTTAACTGGGGAGATATCGGTGGTGCTCTGTCTTCAAAGGTTGCCATTCGGTCAACCAAAGATGTAGGTGTTCAGTTCAATGCTAATGAGTTCAAAAAGTCTACCGAAGAAGTAAAATTGCGCTATACTAACGAGGAAGGGGTTAATAATAGTGATACTAAGAAAACTCCAAGAAGGAAGCGGAAATTAGATCCAAATGCTCAGGAAGCCGCTGCTGAAAATGATGAGGATGGAGATATACGCTATCGATTCTATGAAAGTGCGTCTGCAAGAAAAAGAATCGTGACTGCTGAAGAAAGAGAAAGGGCAATTAATGAGGCAAAAACATTTGAACCAACTAATCCTTTCTGTCGAGTTGTCTTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGAATTTGAATGGTGTTTCAGGATTCATTAAGCTTCAGACCTCCGATGCTAGACAGTGGCCTGTTCGATGCCTTTATAGAGGAGGCCGAGCAAAGTTAAGTCAAGGATGGTATGAATTTACATTAGAGAACAATTTAGGGGAAGGTGACGTCTGTGTTTTCGAGCTGCTTAGAACCAGAGATGTAGTGCTGCAAGTTACTTTGTTTCGTGTAAACGAGGATGAATCAGGGTTATTCAACCCTTCTATGCAGCCGACCCAAAATGTGAGCCATGCGAAACTGTTGAACCCTCACTTACAGCACCGTGTTAGCTCAACTAAATCGGCTAAAGTTTAG 1272 0.4135 MSPRPSFHKIILPTTLQSRQLRIPDNFLKKHGSHLSTAVNLTVPDGTVWSIGLKRVDNRIWLSDGWQDFAQRYSIGIGYFLVFMYEGNSTFIVHMFNMSTAELNYQSTMRSQGPCYSNYHPIFEQMEDIDSFEFLDSSPSNLIPGAMDQLTPGKNHTPSLQNLFNGGSKLNRVNWGDIGGALSSKVAIRSTKDVGVQFNANEFKKSTEEVKLRYTNEEGVNNSDTKKTPRRKRKLDPNAQEAAAENDEDGDIRYRFYESASARKRIVTAEERERAINEAKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQTSDARQWPVRCLYRGGRAKLSQGWYEFTLENNLGEGDVCVFELLRTRDVVLQVTLFRVNEDESGLFNPSMQPTQNVSHAKLLNPHLQHRVSSTKSAKV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01329 423 SMART B3_2 289 384 IPR003340 GO:0003677
Trre1g01329 423 SMART B3_2 7 99 IPR003340 GO:0003677
Trre1g01329 423 MobiDBLite consensus disorder prediction 223 247 - -
Trre1g01329 423 SUPERFAMILY DNA-binding pseudobarrel domain 282 384 IPR015300 -
Trre1g01329 423 Gene3D - 266 386 IPR015300 -
Trre1g01329 423 Pfam B3 DNA binding domain 292 383 IPR003340 GO:0003677
Trre1g01329 423 Pfam B3 DNA binding domain 13 97 IPR003340 GO:0003677
Trre1g01329 423 ProSiteProfiles B3 DNA-binding domain profile. 289 384 IPR003340 GO:0003677
Trre1g01329 423 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Trre1g01329 423 Gene3D - 2 100 IPR015300 -
Trre1g01329 423 PANTHER B3 DOMAIN-CONTAINING 3 372 - -
Trre1g01329 423 CDD B3_DNA 287 382 IPR003340 GO:0003677
Trre1g01329 423 CDD B3_DNA 5 97 IPR003340 GO:0003677
Trre1g01329 423 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Trre1g01329 423 MobiDBLite consensus disorder prediction 214 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01329 Trre-Chr1 9939207 9942647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01329 3 385 B3 DNA Binding Superfamily AT3G18990 51.421 1.68e-130 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01329 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01329 - - gmx:100789352 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01329 1 9939207 9942647 Trre1g01329 1 9939207 9942647 ECH