Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01325 ATGGCTCACCATTTTTCTAATAAGGCCTTAGGTTGTTTTCTTTTCTTTTCTTTTCTTCTTTCTTCTTTTTCAACCTTAGGCCATAGTCATTTGATCCGTGATCCAATAGTGATTATTGGTGGTGGTGAAATTATAATAGGAAATGAAAATGGTGATGCTCCGGTTCAATCGCCATCGCCATCAATAACCATAGGTTCTCCAGCAATAACCATAGGTTCTCCAGCTCCTGCTCCAGCACCTAAAATTGAAATTGTAAATGATAATAATAAAAATAATAATGCTTGTGTCACAAGTTTTCCTAATGAGAGGCTAAGAAGTGCTTATATTGCATTTCAAGCATGGAAAGAGGCAATTTATTCAGACCCTTTTAACACAACTGGTGATTGGGTTGGTAATGATGTGTGTTCTTACACTGGTGTGTTTTGTGCACCTGCTCTTGATGATCCAACATTGAATGTTGTTGCTGGTGTTGATCTTAACCATGCTGACATTGCCGGTCATCTTCCAGAAGAGTTAGGATTATTGAATGATACTGCTCTTTTTCACATTAACTCAAACAGGTTTTGTGGTATTATTCCTGAGAGCTTTAAAAATCTCACCATTATGCATGAGTTTGATATTAGTAACAACCGTTTCGTCGGTGGTTTTCCTTCTGTGGTATTCAAATGGCCAGATTTGAAGTACTTAGATATTAGATACAATGACTTTGACGGATGTTTACCTCCCGAGCTTTTCGAGAAAGAACTCGATGCGATATTTTTGAACAATAACCGTTTCACATGTGGTATACCAGAAACACTTGGAAAATCAACAGCTTCTGTTGTGAGTTTTGCTAACAATAATTTCACAGGTTGTATTCCAAAATCAATTGGAAACATGGTGAACTTGAATGAGATTGTGTTATTGGATAATGGTCTTGGCGGTTGTTTACCACAAGAGATTGGTTTGTTAGAGAATGTAACTGTTTTTGATGCCAGCAATAATGAGTTTGTTGGGACTCTACCAAATTTATCAGGATTGAGGAATGTTGAGGTTATTGACATAGCACACAACAAGCTTAGTGGATATGTTTCCAACACTATTTGTCAACTACCTTTGTTGAATAATTTCACATTCTCTCACAATTACTTTAATGGAGAAGCTCAAACTTGTATTCCTTCAAATAATTCTGATGTTGCATTTGATGATGCTGGAAATTGTTTACCTGGAAGGAAGAATCAAAAGACATATAAGCAATGTTTACCTGTTTTGACTAAACATGTGGATTGTAGCAAACATTGTGGTGCTGGAGGAAAAGGTAATAGTGATGCTCCATCAACACCAAAACCAACTCCATCAAACCCACCAAAGTCTCATCCTCCTAAGGAAGAGACACCAAAGGCTCAACCACCACCAGTTTTGCCACCTGTTGAAGATATTCCACCAACTCTACCACCAGTTGAGGATATTCCACCAACACTTCCACCAGTTAAGGACATTCCACCAACAAGAGCACCAGTTGAGGACATTCCACCAACACTACCACCAGTTAAGGATATTCCACCAACAAGAGCACCTGTTGAGGACATTCCCCCTACACTACCACCAGTTAAAGATATTCCACCAACGCGTGCACCAATGTCATCACCACCACCACCCGTGATTTATGAATCACCCCCTACACCTGTCAATTCACCACCACCACCTGTCCACTCGCCTCCTCCACCAGTCCACTCTCCACCACCACCACCAGTTCATTCTCCTCCACCACTTATTCACTCACCTCCTCCACCAGTCCACTCCCCACCACCACCAGTTCATTCACCTCCTCCACCAGTCAACTCCCCACCACCACCAGTTCACTCTCCACCAGTTGAGGATATTCCACCAACAAGAGCGCCAGTTGAGGACATTCCACCAACAAGAGCACCAGTTAAGGACATTCCCCCTACACTACCACCGGTTGAAGATATTCCACCGACGCGTGCACCAGTGTCATCACCACCACCACACATCATTTACAAATCACCTTTCGTGCCTATTAATTCACCACCACCACCAGTTCACTCTCCTCCACCACCTGTCTACTCACCTCCTCCTCCACCACCGGTTCACTCACCTCCTCCACCAATCCATTCTCCACCACCACCAGTTCATTCTCCTCCACCACCTGTTCACTCACCTCCTCCACCAGTCCACTCTCCACCACCACCAGTTCATTCACCTCCTCCTCCGGTTCACTCTCCACCACCACCAGTTCATTCACCCCCTCCTCCGGTTCACTCTCCACCACCACCAGTTCATTCACCCCCTCCTCCGGTTCACTCCCCACCACCACCTGTCTACTCCCCACCACCGGTGTACTCTCCTCCACCACCCCCACCAGTCCATTCTCCTCCACCCCCCGTCAACTCTCCACCACCACCACCAACATGGGAAGACGTCATTTTGCCACCAATCTTTGGATCTGAATATAGGTCGCCTCCTCCCCCAACAATTGCTGGATACTAA 2490 0.4438 MAHHFSNKALGCFLFFSFLLSSFSTLGHSHLIRDPIVIIGGGEIIIGNENGDAPVQSPSPSITIGSPAITIGSPAPAPAPKIEIVNDNNKNNNACVTSFPNERLRSAYIAFQAWKEAIYSDPFNTTGDWVGNDVCSYTGVFCAPALDDPTLNVVAGVDLNHADIAGHLPEELGLLNDTALFHINSNRFCGIIPESFKNLTIMHEFDISNNRFVGGFPSVVFKWPDLKYLDIRYNDFDGCLPPELFEKELDAIFLNNNRFTCGIPETLGKSTASVVSFANNNFTGCIPKSIGNMVNLNEIVLLDNGLGGCLPQEIGLLENVTVFDASNNEFVGTLPNLSGLRNVEVIDIAHNKLSGYVSNTICQLPLLNNFTFSHNYFNGEAQTCIPSNNSDVAFDDAGNCLPGRKNQKTYKQCLPVLTKHVDCSKHCGAGGKGNSDAPSTPKPTPSNPPKSHPPKEETPKAQPPPVLPPVEDIPPTLPPVEDIPPTLPPVKDIPPTRAPVEDIPPTLPPVKDIPPTRAPVEDIPPTLPPVKDIPPTRAPMSSPPPPVIYESPPTPVNSPPPPVHSPPPPVHSPPPPPVHSPPPLIHSPPPPVHSPPPPVHSPPPPVNSPPPPVHSPPVEDIPPTRAPVEDIPPTRAPVKDIPPTLPPVEDIPPTRAPVSSPPPHIIYKSPFVPINSPPPPVHSPPPPVYSPPPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPVYSPPPPPPVHSPPPPVNSPPPPPTWEDVILPPIFGSEYRSPPPPTIAGY 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01325 829 SUPERFAMILY L domain-like 110 400 - -
Trre1g01325 829 MobiDBLite consensus disorder prediction 441 808 - -
Trre1g01325 829 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 82 633 - -
Trre1g01325 829 FunFam Pollen-specific leucine-rich repeat extensin-like protein 1 107 405 - -
Trre1g01325 829 PRINTS Proline rich extensin signature 508 524 - -
Trre1g01325 829 PRINTS Proline rich extensin signature 437 449 - -
Trre1g01325 829 PRINTS Proline rich extensin signature 472 484 - -
Trre1g01325 829 PRINTS Proline rich extensin signature 541 566 - -
Trre1g01325 829 PRINTS Proline rich extensin signature 452 468 - -
Trre1g01325 829 PRINTS Proline rich extensin signature 484 505 - -
Trre1g01325 829 MobiDBLite consensus disorder prediction 430 829 - -
Trre1g01325 829 Gene3D Ribonuclease Inhibitor 108 400 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01325 Trre-Chr1 9923525 9926014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01325 97 456 Trihelix Transcription Factor Family AT2G15880 61.602 9.81e-162 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01325 - - lang:109330687 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01325 1 9923525 9926014 Trre1g01325 1 9923525 9926014 ECH