Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01321 ATGGATCCTTCTATGAACCATGTTGGTCATGGAGGAATGGATATAGGAGTACCAATTATGCATGAAAGTGATAGGTATGAACTTGTACGTGATATTGGTTCTGGAAATTTTGGTGTGGCTAGACTTATGAGAGATAAACACACTAATCAACTTGTTGCTGTTAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCATAGGTCACTGAGGCATCCAAATATTGTCAGATTCAAGGAGGTCATACTTACCCCGACACATTTAGCTATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGGTTCAGCGAGGATGAGGCACGGTTTTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGCAAATATGTCATCGTGACTTGAAGTTGGAGAACACGTTGTTGGATGGTAGTCCGGCTCCTCGCTTGAAGATTTGCGATTTTGGTTATTCAAAGTCCTCGGTGCTACATTCGCAACCAAAATCTACGGTCGGTACCCCTGCATATATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCCTGCGGGGTGACCTTATATGTCATGTTGGTCGGTGCATATCCTTTTGAGGATCCACAGGAGCCTAAAAATTTCCGGAAGACTATTCATAGGATTTTGAAAGTCCAATACTCAATCCCTGATTATGTTCAAATATCTCCCGAGTGCCGTCATCTGATGTCAAGGATCTTTGTTGCGGACCCTGCACAGAGAATAAGTATGCCTGAGATTCGAAACCACGAGTGGTTTTTGAAGAACCTTCCAGCCGATCTCATTGTTGGGAATACAACGAACGACCATTTTCAGGAGCCTGAACAACCAATGCAGACAGTTGAAGAAATCATGCAGATAATTAGCGAGGCTACTATTCCTGCGGCTGGAACTCATCAGTCTCTCACTCAGTATCTTACCGGTAGCTTGGACATCGATGATGAAATGGACGAGGATATAGACACCGATCCTGACCTTGATATCGATAGCAGTGGTGAAATAGTTTATGCAATGTAA 1104 0.423 MDPSMNHVGHGGMDIGVPIMHESDRYELVRDIGSGNFGVARLMRDKHTNQLVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPQEPKNFRKTIHRILKVQYSIPDYVQISPECRHLMSRIFVADPAQRISMPEIRNHEWFLKNLPADLIVGNTTNDHFQEPEQPMQTVEEIMQIISEATIPAAGTHQSLTQYLTGSLDIDDEMDEDIDTDPDLDIDSSGEIVYAM 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01321 367 Pfam Protein kinase domain 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01321 367 Gene3D Transferase(Phosphotransferase) domain 1 102 290 - -
Trre1g01321 367 CDD STKc_SnRK2-3 25 281 - -
Trre1g01321 367 SUPERFAMILY Protein kinase-like (PK-like) 18 316 IPR011009 -
Trre1g01321 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Trre1g01321 367 Gene3D Phosphorylase Kinase; domain 1 9 101 - -
Trre1g01321 367 FunFam Serine/threonine-protein kinase SRK2E 102 290 - -
Trre1g01321 367 PANTHER SERINE/THREONINE KINASE 25 311 - -
Trre1g01321 367 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Trre1g01321 367 SMART serkin_6 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01321 367 ProSiteProfiles Protein kinase domain profile. 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01321 367 FunFam Serine/threonine-protein kinase SRK2E 19 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01321 Trre-Chr1 9899307 9901866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01321 19 291 CBL-interacting serine-threonine protein kinases AT4G24400 42.553 2.11e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre1g01321 Pkinase 1.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01321 K14498 - gmx:100804702 645.195