Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g01315 | ATGGTGTTGTGCCTCCTAATTAATGTTTCGCGCCAAATAGGTCTTGAGTTAGTCTTGTGGAAGACTGTATCTGACATTACTAAGGATATGAAGGTCCTTAAGAAGATCTTGAAGGAAGGAGAGGGATATGAACAACCAAATGATGGAGCTATGATTCAAGTGAAACTTATCGGGAAGCTGCAAGATGAGACTGTCTTCCTTAAGAAGGGTCATGATGATGATCAGCCATTTGAGTTCAGAATTGATGAAGAACCAGTAATTGATGGACTTGATAGAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCGTTGGTGATCATACAACTTGATCGAATGCTTTTGGTTAATCTGCTCAGGAATTGGCTACTGTTCCTCCTAATTCCACTGTTTACTATGAAGTTGAGCTGA | 408 | 0.402 | MVLCLLINVSRQIGLELVLWKTVSDITKDMKVLKKILKEGEGYEQPNDGAMIQVKLIGKLQDETVFLKKGHDDDQPFEFRIDEEPVIDGLDRAVKNMKKGEIALVIIQLDRMLLVNLLRNWLLFLLIPLFTMKLS | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g01315 | 135 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 49 | 107 | IPR001179 | GO:0003755 | |
| Trre1g01315 | 135 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 43 | 108 | IPR001179 | GO:0003755 | |
| Trre1g01315 | 135 | SUPERFAMILY | FKBP-like | 15 | 108 | - | - | |
| Trre1g01315 | 135 | Gene3D | - | 22 | 112 | IPR046357 | GO:0003755 | |
| Trre1g01315 | 135 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 28 | 108 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g01315 | Trre-Chr1 | 9872356 | 9872982 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre1g01315 | 8 | 116 | Calmodulin-binding Proteins | AT3G25230 | 63.636 | 5.79e-42 | 144 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g01315 | K09571 | - | pvy:116139086 | 164.466 |