Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01299 ATGGCTATGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGGGAGCAAGACATAGCATTTGAGAATGCCTTGGCGACTTATCCTGAGGATGCTTCGGATCGATGGGAGAAGATTGCGGCTGATGTACCGGGGAAGACTGTGGAAGAAATTAAAGAGCATTATGAGCTCTTGGTTGATGATGTTAGCCAGATTGAAGCTGGTTGTGTGCCTCTACCGTCGTATAATTCTTCTTCGGAGGGTTCAACAGGTCAAGCTAGTGATGAAGGAGTTGGGGGGAAAAAGAATGGGCACAATAACGAGTCTAACCATGGAACTAAGGCTTCAAGATCCGATCAAGAACGACGGAAGGGTATTGCTTGGACTGAAGAAGAGCACAGGTTATTTCTTCTGGGCCTGGACAAGTACGGAAAAGGCGACTGGCGAAGTATATCACGGAACTTTGTGGTGACCCGAACACCGACACAAGTAGCAAGCCACGCCCAAAAATACTTCATTCGATTGAACTCAATGAACAAAGACCGAAGGCGATCGAGCATACATGATATTACAAGCGTTAACAACGGAGATATTTCAACACCTCAAGGACCAATCACCGGTCAAACGAACGGTTCCGCTGGAAATTCTGCAAGCAAATCAGTCAAGCAAGTTTCTCCATCCACAACTGGGATACCAGGTGCAGGAATATATGCTGCCCCAACCATCGGACAACCTGTCGGAGGACCTTTAGTATCTGCTGTTGGCACCCCTGTGAATCTTTCTGCACCTCCACACATGGCGTATGGTATTCGAGCACCGGTTCCTGGCACCGTTGTACCTGGCGCACCGATGAACATGGTCCCTATGACATACCCTATGCCTCATACTTCTGGTCCTCACAGGTGA 882 0.4841 MAMDEVDSSSEWSREQDIAFENALATYPEDASDRWEKIAADVPGKTVEEIKEHYELLVDDVSQIEAGCVPLPSYNSSSEGSTGQASDEGVGGKKNGHNNESNHGTKASRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISTPQGPITGQTNGSAGNSASKSVKQVSPSTTGIPGAGIYAAPTIGQPVGGPLVSAVGTPVNLSAPPHMAYGIRAPVPGTVVPGAPMNMVPMTYPMPHTSGPHR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01299 293 MobiDBLite consensus disorder prediction 181 219 - -
Trre1g01299 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 116 166 IPR006447 GO:0003677
Trre1g01299 293 Gene3D - 118 170 - -
Trre1g01299 293 CDD SANT 11 58 IPR001005 -
Trre1g01299 293 PANTHER TRANSCRIPTION FACTOR KUA1 7 287 - -
Trre1g01299 293 SUPERFAMILY Homeodomain-like 114 169 IPR009057 -
Trre1g01299 293 Pfam Myb-like DNA-binding domain 119 164 IPR001005 -
Trre1g01299 293 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Trre1g01299 293 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Trre1g01299 293 FunFam Transcription factor SRM1 4 71 - -
Trre1g01299 293 ProSiteProfiles SANT domain profile. 7 57 IPR017884 -
Trre1g01299 293 SMART sant 116 166 IPR001005 -
Trre1g01299 293 SMART sant 8 60 IPR001005 -
Trre1g01299 293 CDD SANT 119 164 IPR001005 -
Trre1g01299 293 Gene3D - 10 57 - -
Trre1g01299 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 168 IPR017930 -
Trre1g01299 293 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Trre1g01299 293 MobiDBLite consensus disorder prediction 72 116 - -
Trre1g01299 293 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Trre1g01299 293 MobiDBLite consensus disorder prediction 174 219 - -
Trre1g01299 293 FunFam transcription factor MYB1R1 118 169 - -
Trre1g01299 293 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01299 Trre-Chr1 9787473 9791235 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g01299 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01299 - - ccaj:109792793 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01299 1 9787473 9791235 Trre1g01299 1 9787473 9791235 ECH