Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01275 ATGAAAGACTTCTATGTCCATAACAATATGATGATGACTCCGAATTTGAATCTTGAAGCTGAAAATAGTTTAGAAGTTAGCAGTCAAGTAGGTTCCAATGATCTTACCAAAGACAGTGCAACAACTTCTTCATGTCTTACAAATCTCACTAAGCCTGACATTAATCTAAGTTCTGTTTCCCTTGACTTGAGTCTCAACTTCGATCCGAGCGATGAAGATTTGAAGGAAACAAGTGATACTAATAGTGAAGTAGTAGGAGCTGATCATGCTCATAATACTACTTCAGCGCCACCGATTCATCGAGTTTTCTCTTGTAATTATTGTAAGAGAAAATTCTTTAGCTCACAAGCATTAGGTGGACATCAGAACGCTCATAAACGAGAGAGAACAATGGCAAAACGCGCTATGCGACTTGGAATGTTCACCGATAGGTATACGAGCTTAGCTTCTTTACCTCTTCATGGTTCTTCTTCTTTTCATTCTCTTGGTATTCAAGCTCATTCTGCAATGCACCAACAATACATGCCATCGTCTTCGTTGTCATCAATGAGGGCTCATGAAATGAGAGCTACAGCAAAATTCGAGAAAGATTGTTTCGGAGTAGCACCGATGTTTATGCATAATGATGATATTGGTATATTTTGGCCTGGAAGTTTCAGGCAGATAGATCAAAATACTAATTTTGTTGTAGCAACAGAACCTCCTCAACAAAAATCTACAGCTCCTGATCTCACTCTGAGGCTTTAA 747 0.3869 MKDFYVHNNMMMTPNLNLEAENSLEVSSQVGSNDLTKDSATTSSCLTNLTKPDINLSSVSLDLSLNFDPSDEDLKETSDTNSEVVGADHAHNTTSAPPIHRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRLGMFTDRYTSLASLPLHGSSSFHSLGIQAHSAMHQQYMPSSSLSSMRAHEMRATAKFEKDCFGVAPMFMHNDDIGIFWPGSFRQIDQNTNFVVATEPPQQKSTAPDLTLRL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01275 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 36 188 IPR044246 GO:0009788
Trre1g01275 248 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Trre1g01275 248 Gene3D Classic Zinc Finger 78 147 - -
Trre1g01275 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Trre1g01275 248 FunFam Zinc finger protein 2 78 149 - -
Trre1g01275 248 SUPERFAMILY beta-beta-alpha zinc fingers 101 131 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01275 Trre-Chr1 9625962 9627570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01275 101 248 C2H2 Transcription Factor Family AT1G66140 42.308 2.12e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g01275 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01275 - - psat:127096958 341.658