Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01260 ATGTCTTTTCATTGGCTGTATTTTACATGTCTATGTCTCATGGTTGGTTTAGAAGTAGAGCTATCAAATGCACAAATTTATAAAAGACATGGAAATAGGTTACTCCCTTACAAGACAATAATTGTTGACCCAAAGAGGAATGGAAATTTCTCTACAATACAATCTGCCATTAATTCTATCCCTTCAAACAATAGGTATTGGACTTCCATCAATATAAAAGCAGGCATCTACAGGGAGAAGTTGAAGATTCCACATGATAAGCCATACATCATTATACAAGGAGAGGGAATGAAGAAGACTATAGTCGAATGGGATGACCATGCAAATACTGCACAAAGCCCTACGTTTTTCAGCATGGCTGACCATATTGTGGTCAAGTTTATCACTTTTAGGAATACATACAATGATCCGAAAAATGGCAATCCAATGGTACCTGCCGTAGCTGCAATGATAAGTGGTGACAAGTCATACTTCTATAGTGTTGCCTTCTTAGGTTTACAAGACACTTTGTGGGATGATGAAGGAAGACATTACTACAAGAATTGTTTAATTCAAGGTGCTGCTGATTTCATATTTGGTGCTGGCCAGTCATTATATGAGGAGTGTTCCATATATGTAATTGGTGCAGCTCTAGGACCAGGGATTTGTGGTTTTATAACAGCACAAGGGAGAACAAATCCAAATGATGCAAATGGATTTGTTTTTAAGAATTGTAATGTGTTTGGAGATGGTACAACATATTTGGGAAGACCATGGAGAGCATATGCTAGAGTTCTTTTCTACAATACCAATATGTCCAAAATTGTACTACCTCTTGGTTGGGATCCATGGCATTTAGTTGGTCACGAGGATCACATACAATTTTCAGAGTATAAAAATTATGGACCTGGTTCTAACACAAACAATCGAGTGAAATGGATGAAGAAATTGGACTTGCGAACAGTTACTAGAATGGCAAGTATTGGTTTTATTGATGATGAAGGATGGGTTAAAAATCAACTATTTTAA 1008 0.3681 MSFHWLYFTCLCLMVGLEVELSNAQIYKRHGNRLLPYKTIIVDPKRNGNFSTIQSAINSIPSNNRYWTSINIKAGIYREKLKIPHDKPYIIIQGEGMKKTIVEWDDHANTAQSPTFFSMADHIVVKFITFRNTYNDPKNGNPMVPAVAAMISGDKSYFYSVAFLGLQDTLWDDEGRHYYKNCLIQGAADFIFGAGQSLYEECSIYVIGAALGPGICGFITAQGRTNPNDANGFVFKNCNVFGDGTTYLGRPWRAYARVLFYNTNMSKIVLPLGWDPWHLVGHEDHIQFSEYKNYGPGSNTNNRVKWMKKLDLRTVTRMASIGFIDDEGWVKNQLF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01260 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 331 - -
Trre1g01260 335 SUPERFAMILY Pectin lyase-like 36 331 IPR011050 -
Trre1g01260 335 Gene3D - 36 335 IPR012334 -
Trre1g01260 335 FunFam Pectinesterase 36 334 - -
Trre1g01260 335 Pfam Pectinesterase 40 319 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01260 Trre-Chr1 9546243 9548822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01260 3 283 Carbohydrate Esterase AT2G19150 46.099 3.66e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01260 - - gmx:100819252 463.381