Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01259 ATGTTTGGTTTGGGAGTAGAGCTATCAAATGCTCAAATTCAAAAAACATATGGAAATAAGTTACTCCCTTACAAGACAATAATTGTTGACTCAAAGGGGCATGGAAATTTTTCTACCATACAATCTGCTATTAATTCTATCCCTTCAAACAATAAGAATTGGACTTCCATCAATATTACAGCAGGACTCTACAGGGAGAAGTTAACGATTCCACATGATAAGCCTTATATCATTATACAAGGAGAGGGAATGAAGAAGACTATAGTTGAATGGGATGACCATGCATCTACATTACAAAGCCCTACATTCTCCGCCGGGGCTGACCATATTGTGGTCAAGTTTATCACCTTTAAGAATTCATACAATGATCCAGGAAAAGGTAATCGAATGTTACCTGCCGTAGCTGCAATGGTAAGTGGTGACAAGGCACACTTCCATAGTGTTGCCTTCTTAGGTTTACAAGACACTTTGTGGGATGATGCAGGAAGACATTACTACACAAATTGTTTCATACAAGGTGCTACTGATTTCATATTTGGTGCTGGCCAGTCTTTATATGAGAATTGTTTCATATCTGTAAATACTGCAGCTCTAGGGGTTCCTGGTTTTATAACAGCACAAGCGAGAACAAATCCAAATGATGCAAATGGATTTGTTTTTAAGAATTGTAATGTGTCTGGAAATGGTACAACATATTTAGGAAGACCATGGAGAGCATATGCTAGAGTTCTTTTCTACCATACATTTATGTCCAACATTGTACCTCTTGGTTGGAATCCATGGAATTTCGTTGGTCATGAGGATCGCATACAATTTTCAGAGTATCAAAATTATGGACCTGGTTCTAATACAAGCAATAGAGTGAAATGGATGAAGCAATTGGACTTGCCAACGGTTACTAAAATGACAAGTATTGGTTTTATTGATGATGATGGATGGGTTAAGAATCAACTATTCTAA 960 0.3729 MFGLGVELSNAQIQKTYGNKLLPYKTIIVDSKGHGNFSTIQSAINSIPSNNKNWTSINITAGLYREKLTIPHDKPYIIIQGEGMKKTIVEWDDHASTLQSPTFSAGADHIVVKFITFKNSYNDPGKGNRMLPAVAAMVSGDKAHFHSVAFLGLQDTLWDDAGRHYYTNCFIQGATDFIFGAGQSLYENCFISVNTAALGVPGFITAQARTNPNDANGFVFKNCNVSGNGTTYLGRPWRAYARVLFYHTFMSNIVPLGWNPWNFVGHEDRIQFSEYQNYGPGSNTSNRVKWMKQLDLPTVTKMTSIGFIDDDGWVKNQLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01259 319 Pfam Pectinesterase 27 310 IPR000070 GO:0030599|GO:0042545
Trre1g01259 319 FunFam Pectinesterase 23 318 - -
Trre1g01259 319 Gene3D - 23 319 IPR012334 -
Trre1g01259 319 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 24 315 - -
Trre1g01259 319 SUPERFAMILY Pectin lyase-like 23 315 IPR011050 -
Trre1g01259 319 ProSitePatterns Pectinesterase signature 2. 171 180 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01259 Trre-Chr1 9533655 9536527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01259 25 267 Carbohydrate Esterase AT2G19150 47.773 1.19e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01259 - - aprc:113870328 418.698