Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01258 ATGTCTTTTCTTCATTGGTTAATCTATTTTACATGTCTATGTCTCATGTTTGGTTTGGGAGTAGAGCTATCAAATGCTCAAATTCAAAAAACATATGGAAATAAGTTACTCCCTTACAAGACAATAATTGTTGACTCAAAGGGGCATGGAAATTTTTCTACCATACAATCTGCTATTAATTCTATCCCTTCAAACAATAAGAATTGGACTTCCATCAATATTACAGCAGGACTCTACAGGGAGAAGTTAACGATTCCACATGATAAGCCTTATATCATTATACAAGGAGAGGGAATGAAGAAGACTATAGTTGAATGGGATGACCATGCATCTACATTACAAAGCCCTACATTCTCCGCCGGGGCTGACCATATTGTGGTCAAGTTTATCACCTTTAAGAATTCATACAATGATCCAGGAAAAGGTAATCGAATGTTACCTGCCGTAGCTGCAATGGTAAGTGGTGACAAGGCACACTTCCATAGTGTTGCCTTCTTAGGTTTACAAGACACTTTGTGGGATGATGCAGGAAGACATTACTACACAAATTGTTTCATACAAGGTGCTACTGATTTCATATTTGGTGCTGGCCAGTCTTTATATGAGAATTGTTTCATATCTGTAAATACTGCAGCTCTAGGGGTTCCTGGTTTTATAACAGCACAAGCGAGAACAAATCCAAATGATGCAAATGGATTTGTTTTTAAGAATTGTAATGTGTCTGGAAATGGTACAACATATTTAGGAAGACCATGGAGAGCATATGCTAGAGTTCTTTTCTACCATACATTTATGTCCAACATTGTACCTCTTGGTTGGAATCCATGGAATTTCGTTGGTCATGAGGATCGCATACAATTTTCAGAGTATCAAAATTATGGACCTGGTTCTAATACAAGCAATAGAGTGAAATGGATGAAGCAATTGGACTTGCCAACGGTTACTAAAATGACAAGTATTGGTTTTATTGATGATGATGGATGGGTTAAGAATCAACTATTCTAA 1005 0.3692 MSFLHWLIYFTCLCLMFGLGVELSNAQIQKTYGNKLLPYKTIIVDSKGHGNFSTIQSAINSIPSNNKNWTSINITAGLYREKLTIPHDKPYIIIQGEGMKKTIVEWDDHASTLQSPTFSAGADHIVVKFITFKNSYNDPGKGNRMLPAVAAMVSGDKAHFHSVAFLGLQDTLWDDAGRHYYTNCFIQGATDFIFGAGQSLYENCFISVNTAALGVPGFITAQARTNPNDANGFVFKNCNVSGNGTTYLGRPWRAYARVLFYHTFMSNIVPLGWNPWNFVGHEDRIQFSEYQNYGPGSNTSNRVKWMKQLDLPTVTKMTSIGFIDDDGWVKNQLF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01258 334 ProSitePatterns Pectinesterase signature 2. 186 195 IPR033131 -
Trre1g01258 334 SUPERFAMILY Pectin lyase-like 38 330 IPR011050 -
Trre1g01258 334 Gene3D - 38 334 IPR012334 -
Trre1g01258 334 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 330 - -
Trre1g01258 334 FunFam Pectinesterase 38 333 - -
Trre1g01258 334 Pfam Pectinesterase 42 325 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01258 Trre-Chr1 9533655 9536572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01258 40 282 Carbohydrate Esterase AT2G19150 47.773 1.91e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01258 - - gmx:100819252 422.55