Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01256 ATGAAAAAGCTAAAAGCTACAATATCAAAAAATGATCTTGATTGGTCAGACAAAGATTTTTGCAATTGGGAGAAAGTTACTTGTAGTGGAACAAAAAGGGTCACTTCAATTGAACTTAGAAGTTCAAATGTTGAAGGTTCTTTACCACAAGAATTGGTGCAACTCACTGAGTTAACTTATTTTCGTTGCAGTGTAAATAGTTTATCTGGAAATTTCCCTTACATGTCAAATTCCCTTCAGAAGTTGTATATTGACAGTAACAAATTCACTTCCATGCCAAGTGATTTCTTCACAAATATGAGTAATTTGATAGAGGTGAAAATTGATTCTAACCCTTTTTCTCAATGGCAAATTCCTTTTAGTCTTAACAATTGTTTACCTCTTCAGACTTTTTCTGCTGTGAATGTTAGTTTTGTTGGTAAAATTCCTGAATTCTTTGGAAATGATACTTTACCAAGTTTGATTACTTTGCAATTGTCTTTTAATTTTCTTGAAGGTAATTTACCTAATAGTTTATCTGGTAGTTTAATACAGACCCTTTGGGTGAATGGTCAAAAGAGTAATAATAAACTCAATGGTACACTTTCTGTTTTACAAAATATGACATCATTGCAACAAATTTGGGTTCATGGAAATTCGTTTACCGGTCCTATACCTTATTTTTCAAATCATGATCAATTGTTTGATGTTAGTTTGAGGGATAATATGTTAACCGGTGTTGTGCCATCGTCTTTAACTAAACTTGAGAGTTTGAAAATTGTGAATTTGACAAATAATGATCTTCAAGGTTCACCTCCTAAGTTTCAAGACGGTGTTCAGGTTGATATGGATATGGATAAAGGGAGGCATAGCTTTTGCACTGAGGTTGTTGGTCAACCATGTAGTCAACTTGTTAATGTTTTGCTTACTGTTGTTGAACCTTTTGGTTATCCTCTTAAACTTGCTCAAAGTTGGCAAGGTAATGACCCTTGTCGTGATTCTAATTGGTTAGGGATTGTTTGTTCTTCTGGCGGTAACATTATCATTATCGACTTTGAAAATAAGGGTTTTTCTGGTAGTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTGACGAAGTTGCGTCTTGCTAACAATAATCTCACTGGTACTATACCTAAGGAACTTGCTAGTATGCCTGCTTTGAAATTGCTAGATGTTTCCAATAATTCGTTGTATGGTCAGATACCGTCGTTTCGCACAGATGTGGTTGTTATCACCAGTGGGAATCCTGATATCGGAAAGGATAAACCTCACGACTCTAGTTCAGGAGGTGAAGATAAGAAGAAAATTCGTGTTGGAGCTATTGTTGGTATTGTGATGGGGATTTTTGGCTTACTTGGTGTAGGGGTTTTTGTATTTATTATGTATGGTAAAAGACATCATAAGCGCGACGTCAAAGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGCTGTGAAGATAAGTCTTGCTGCATCTGAAAGTGCTGGTGCTGTTGTTGTAGGAGGAACCGGTGGATTTAATCTATTGAGTAGTGTTCAAAATGTGGATATTGAAGAACAAGCCTCATTCCAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTAACTGGACGAGTCACTACAAAGGTTGACATATACAGCTACGGCGTGATTCTTATGGAGATGATAACTGGAAGAAGAGCAATTGATAACAGCCAACCAGAGGAGAACATCCACCTTGTTGCATGGTTCCGCAGGATGCTATTGAACAAAGACTCGTTCGATAAGGTCATTGATCCAGCAATGAATATCAACGATGAAGGCTTGAAGAGTTTCTGGACTATTGCAGGATTGGCCAGCCAGTGTTGTGCAAGAGAGCCTCATCAACGCCCCAACATGGGACACATAGTGAACGTCCTAGCACCTCTTGTCGAGATTTGGAAGCCAGCTGAACTTGATGCCGATGACATGTATGGGATTGACTTCGATATGAGTTTGCCTCAAGCACTAATTAAGTGGCAGAATCTTGAAGGAATGAGCAACACACTCGATGTTTCGTATTCTTCATCGATGGTTGATAGTTGTGAGAATACACAGCCAAGTATACCACCTCGGTCTCCTGGATTTCTTAATTCCTTCACATCTGCTGATGGGCGATGA 2178 0.3829 MKKLKATISKNDLDWSDKDFCNWEKVTCSGTKRVTSIELRSSNVEGSLPQELVQLTELTYFRCSVNSLSGNFPYMSNSLQKLYIDSNKFTSMPSDFFTNMSNLIEVKIDSNPFSQWQIPFSLNNCLPLQTFSAVNVSFVGKIPEFFGNDTLPSLITLQLSFNFLEGNLPNSLSGSLIQTLWVNGQKSNNKLNGTLSVLQNMTSLQQIWVHGNSFTGPIPYFSNHDQLFDVSLRDNMLTGVVPSSLTKLESLKIVNLTNNDLQGSPPKFQDGVQVDMDMDKGRHSFCTEVVGQPCSQLVNVLLTVVEPFGYPLKLAQSWQGNDPCRDSNWLGIVCSSGGNIIIIDFENKGFSGSISPSFASLSSVTKLRLANNNLTGTIPKELASMPALKLLDVSNNSLYGQIPSFRTDVVVITSGNPDIGKDKPHDSSSGGEDKKKIRVGAIVGIVMGIFGLLGVGVFVFIMYGKRHHKRDVKVQTPNAIVVHPRHSGDGNAVKISLAASESAGAVVVGGTGGFNLLSSVQNVDIEEQASFQTRLAGTFGYLAPEYAVTGRVTTKVDIYSYGVILMEMITGRRAIDNSQPEENIHLVAWFRRMLLNKDSFDKVIDPAMNINDEGLKSFWTIAGLASQCCAREPHQRPNMGHIVNVLAPLVEIWKPAELDADDMYGIDFDMSLPQALIKWQNLEGMSNTLDVSYSSSMVDSCENTQPSIPPRSPGFLNSFTSADGR 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01256 725 Gene3D Ribonuclease Inhibitor 2 292 IPR032675 -
Trre1g01256 725 SUPERFAMILY L domain-like 19 403 - -
Trre1g01256 725 Gene3D Transferase(Phosphotransferase) domain 1 483 662 - -
Trre1g01256 725 MobiDBLite consensus disorder prediction 700 725 - -
Trre1g01256 725 Pfam Leucine rich repeat 357 398 IPR001611 GO:0005515
Trre1g01256 725 PANTHER OSJNBA0070M12.3 PROTEIN 1 499 - -
Trre1g01256 725 FunFam Receptor-like kinase TMK4 1 291 - -
Trre1g01256 725 Pfam Protein kinase domain 532 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01256 725 Pfam Leucine rich repeat N-terminal domain 311 335 IPR013210 -
Trre1g01256 725 Pfam Leucine rich repeat N-terminal domain 13 29 IPR013210 -
Trre1g01256 725 FunFam Leucine-rich repeat receptor-like kinase 296 422 - -
Trre1g01256 725 ProSiteProfiles Protein kinase domain profile. 340 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01256 725 Gene3D Ribonuclease Inhibitor 297 423 IPR032675 -
Trre1g01256 725 SMART LRR_typ_2 361 385 IPR003591 -
Trre1g01256 725 SMART LRR_typ_2 78 99 IPR003591 -
Trre1g01256 725 SMART LRR_typ_2 248 270 IPR003591 -
Trre1g01256 725 SMART LRR_typ_2 151 175 IPR003591 -
Trre1g01256 725 SUPERFAMILY Protein kinase-like (PK-like) 530 663 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01256 Trre-Chr1 9521874 9524972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01256 21 425 Receptor kinase-like Gene Family AT5G51350 28.315 9.87e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre1g01256 Pkinase 2.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01256 - K00924 gmx:100776064 594.734