LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g01255	ATGGGTTTCAGAGTTTCCCACGTTCTTCAACTTATGGTACTGTTTTTTTCTTTAATATTTGCTTGTGCATGGTGTCAAGATGATGATACTGTGATGAAAAAGCTAAAAGCTACAATATCAAAAAATGATCTTGATTGGTCAGACAAAGATTTTTGCAATTGGGAGAAAGTTACTTGTAGTGGAACAAAAAGGGTCACTTCAATTGAACTTAGAAGTTCAAATGTTGAAGGTTCTTTACCACAAGAATTGGTGCAACTCACTGAGTTAACTTATTTTCGTTGCAGTGTAAATAGTTTATCTGGAAATTTCCCTTACATGTCAAATTCCCTTCAGAAGTTGTATATTGACAGTAACAAATTCACTTCCATGCCAAGTGATTTCTTCACAAATATGAGTAATTTGATAGAGGTGAAAATTGATTCTAACCCTTTTTCTCAATGGCAAATTCCTTTTAGTCTTAACAATTGTTTACCTCTTCAGACTTTTTCTGCTGTGAATGTTAGTTTTGTTGGTAAAATTCCTGAATTCTTTGGAAATGATACTTTACCAAGTTTGATTACTTTGCAATTGTCTTTTAATTTTCTTGAAGGTAATTTACCTAATAGTTTATCTGGTAGTTTAATACAGACCCTTTGGGTGAATGGTCAAAAGAGTAATAATAAACTCAATGGTACACTTTCTGTTTTACAAAATATGACATCATTGCAACAAATTTGGGTTCATGGAAATTCGTTTACCGGTCCTATACCTTATTTTTCAAATCATGATCAATTGTTTGATGTTAGTTTGAGGGATAATATGTTAACCGGTGTTGTGCCATCGTCTTTAACTAAACTTGAGAGTTTGAAAATTGTGAATTTGACAAATAATGATCTTCAAGGTTCACCTCCTAAGTTTCAAGACGGTGTTCAGGTTGATATGGATATGGATAAAGGGAGGCATAGCTTTTGCACTGAGGTTGTTGGTCAACCATGTAGTCAACTTGTTAATGTTTTGCTTACTGTTGTTGAACCTTTTGGTTATCCTCTTAAACTTGCTCAAAGTTGGCAAGGTAATGACCCTTGTCGTGATTCTAATTGGTTAGGGATTGTTTGTTCTTCTGGCGGTAACATTATCATTATCGACTTTGAAAATAAGGGTTTTTCTGGTAGTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTGACGAAGTTGCGTCTTGCTAACAATAATCTCACTGGTACTATACCTAAGGAACTTGCTAGTATGCCTGCTTTGAAATTGCTAGATGTTTCCAATAATTCGTTGTATGGTCAGATACCGTCGTTTCGCACAGATGTGGTTGTTATCACCAGTGGGAATCCTGATATCGGAAAGGATAAACCTCACGACTCTAGTTCAGGAGGTGAAGATAAGAAGAAAATTCGTGTTGGAGCTATTGTTGGTATTGTGATGGGGATTTTTGGCTTACTTGGTGTAGGGGTTTTTGTATTTATTATGTATGGTAAAAGACATCATAAGCGCGACGTCAAAGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGCTGTGAAGATAAGTCTTGCTGCATCTGAAAGTGCTGGTGCTGTTGTTGTAGGAGGAACCGGTGGATTTAATCTATTGAGTAGTGTTCAAAATGTGGATATTGTATCTGACTTTGGATTGGTTCGACTTGCTCAAGAAGAACAAGCCTCATTCCAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTAACTGGACGAGTCACTACAAAGGTTGACATATACAGCTACGGCGTGATTCTTATGGAGATGATAACTGGAAGAAGAGCAATTGATAACAGCCAACCAGAGGAGAACATCCACCTTGTTGCATGGTTCCGCAGGATGCTATTGAACAAAGACTCGTTCGATAAGGTCATTGATCCAGCAATGAATATCAACGATGAAGGCTTGAAGAGTTTCTGGACTATTGCAGGATTGGCCAGCCAGTGTTGTGCAAGAGAGCCTCATCAACGCCCCAACATGGGACACATAGTGAACGTCCTAGCACCTCTTGTCGAGATTTGGAAGCCAGCTGAACTTGATGCCGATGACATGTATGGGATTGACTTCGATATGAGTTTGCCTCAAGCACTAATTAAGTGGCAGAATCTTGAAGGAATGAGCAACACACTCGATGTTTCGTATTCTTCATCGATGGTTGATAGTTGTGAGAATACACAGCCAAGTATACCACCTCGGTCTCCTGGATTTCTTAATTCCTTCACATCTGCTGATGGGCGATGA	2304	0.3828	MGFRVSHVLQLMVLFFSLIFACAWCQDDDTVMKKLKATISKNDLDWSDKDFCNWEKVTCSGTKRVTSIELRSSNVEGSLPQELVQLTELTYFRCSVNSLSGNFPYMSNSLQKLYIDSNKFTSMPSDFFTNMSNLIEVKIDSNPFSQWQIPFSLNNCLPLQTFSAVNVSFVGKIPEFFGNDTLPSLITLQLSFNFLEGNLPNSLSGSLIQTLWVNGQKSNNKLNGTLSVLQNMTSLQQIWVHGNSFTGPIPYFSNHDQLFDVSLRDNMLTGVVPSSLTKLESLKIVNLTNNDLQGSPPKFQDGVQVDMDMDKGRHSFCTEVVGQPCSQLVNVLLTVVEPFGYPLKLAQSWQGNDPCRDSNWLGIVCSSGGNIIIIDFENKGFSGSISPSFASLSSVTKLRLANNNLTGTIPKELASMPALKLLDVSNNSLYGQIPSFRTDVVVITSGNPDIGKDKPHDSSSGGEDKKKIRVGAIVGIVMGIFGLLGVGVFVFIMYGKRHHKRDVKVQTPNAIVVHPRHSGDGNAVKISLAASESAGAVVVGGTGGFNLLSSVQNVDIVSDFGLVRLAQEEQASFQTRLAGTFGYLAPEYAVTGRVTTKVDIYSYGVILMEMITGRRAIDNSQPEENIHLVAWFRRMLLNKDSFDKVIDPAMNINDEGLKSFWTIAGLASQCCAREPHQRPNMGHIVNVLAPLVEIWKPAELDADDMYGIDFDMSLPQALIKWQNLEGMSNTLDVSYSSSMVDSCENTQPSIPPRSPGFLNSFTSADGR	767

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g01255	767	SUPERFAMILY	L domain-like	49	434	-	-
	Trre1g01255	767	PANTHER	OSJNBA0070M12.3 PROTEIN	9	531	-	-
	Trre1g01255	767	Pfam	Protein kinase domain	546	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g01255	767	SUPERFAMILY	Protein kinase-like (PK-like)	546	705	IPR011009	-
	Trre1g01255	767	Gene3D	Ribonuclease Inhibitor	328	454	IPR032675	-
	Trre1g01255	767	ProSiteProfiles	Protein kinase domain profile.	371	692	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g01255	767	SMART	serkin_6	478	692	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g01255	767	FunFam	Leucine-rich repeat receptor-like kinase	327	453	-	-
	Trre1g01255	767	Gene3D	Ribonuclease Inhibitor	26	323	IPR032675	-
	Trre1g01255	767	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	22	-	-
	Trre1g01255	767	MobiDBLite	consensus disorder prediction	742	767	-	-
	Trre1g01255	767	SMART	LRR_typ_2	392	416	IPR003591	-
	Trre1g01255	767	SMART	LRR_typ_2	109	130	IPR003591	-
	Trre1g01255	767	SMART	LRR_typ_2	182	206	IPR003591	-
	Trre1g01255	767	SMART	LRR_typ_2	279	301	IPR003591	-
	Trre1g01255	767	Gene3D	Transferase(Phosphotransferase) domain 1	518	704	-	-
	Trre1g01255	767	FunFam	Receptor-like kinase TMK4	26	322	-	-
	Trre1g01255	767	Pfam	Leucine rich repeat N-terminal domain	343	366	IPR013210	-
	Trre1g01255	767	Pfam	Leucine rich repeat N-terminal domain	32	60	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g01255	Trre-Chr1	9521874	9525065	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g01255	557	688	Receptor kinase-like Gene Family	AT4G02010	42.857	2.42e-28	119

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Trre1g01255		Pkinase	2.7e-14	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g01255	K00924		-	gmx:100776064	613.609