Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01253 ATGGGTTTCGGAGTTTCCTACGTTCTTCACCTTGTTGTGCTGTTTTCTTTGATGTTTGTTTGTGCATGGTCTCAAGATGATGGTGCTGTGATGCAAAAGCTGAAAAATAAAATCAGTGGTGTTAATTGGTCAGACAAAGATTTTTGCAACTGGGATACAGTTCTTTGTAATAATGGAAGAAGGGTCACTTCAATTGTAATTCCGCAGAATCTCAATGTTCATGGTTCTTTACCACAAGAATTGGTGCAACTCACCGAGTTAACTACTTTTCAGTGCACTGGTAATAGTTTATCTGGTAATGTTCCTTACATGCCAAATTCCCTTCAAAAGTTGTCTATTGACAGCAACAAGTTCACTTCAATGCCAATTGATTTCTTCAACAACATGACTAATTTGATAGAGGTGAGAATTGGTTATAACCCTTTTTCTCAATGGCAAATTCCTTCTGGTCTTAAGAATTGTTTATCCCTGCAAACATTTTCTGCGGTAAATGTTAGTTTTTTTGGTCAAATCCCTGATTTTTTTGGACAAGAAAATTTTCCAAGCTTGAATTTTTTGGGTCTAAGTTTCAATTCTCTTGAAGGTAATTTGCCTAATAGTTTATCTAGTAGTACTTCATTACAGACCCTTTGGGTGAATGGTCAAATGAGTAAAAATAAACTCAATGGTACACTTTCTGTTTTACAAAGTATGACATCATTGCAACAAATTTGGGTTCATGGCAATTTGTTTACCGGTCCTATACCTGATTTTACAAATTTCGATCGATTGTTTGATGTTAGTTTGAGGGATAATCAATTGACCGGTGTTGTTCCGTCGTCTTTGACCAACCTTACGAGTTTGAAAATTGTGAATTTGACAAACAATAATCTTCAAGGTTCACCACCTATGTTTCCAAACGGTGTTCACGTTGATATGGATTTGGTTAAAGGGACTAATAGCTTTTGCACTAAGGTTGTTGGTGAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTCAACCTTTTGGTTATCCTCTTAAACTTGTTCAAAGTTGGCAAGGTAATAGCCCTTGTAATGGCAGTAGTTGGGAATGGATTGGTTGTTCTGGTGGTAATGTTTCTGCTATTCACTTTCAAAACAAGAGTTTATCTGGCAGTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTAACGGAGTTGATTCTTGCTAACAATAATCTCACTGGAACTATACCTAAGGAACTTGCTAGTATGCCGGCTTTGAAATTGCTAGATGTTTCCAATAATTCATTATATGGTCAGATACCGTCGTTTCGCGCAGATGTGATTGTTAAAACTGATATGAATCCTGATATCGGAAAGGATAAACCTCCCAGCTCGCCCGGTTCTAGTACTGGAGGTGAAGATAAGAAGAAACTTGGTGTTGGAGCAATTGTTGGTATTGTGATTGGGATTGTTGGCTTACTTGGTGTAGGGGTTTTGGTATTTGTTATGTATGGTAGAAGACATAATAAGCGCGATGGAAAAGTTCAAACTCGAAATGATCCTAGTCATTCTAGAGATGCAAATGCTGTGAAGATAAGTGTTGCAGCATCTGGAAGTGCTGGTGCCGTTGTTGTAGGAGGAACCGGTGGTTTTAGTCCTTCGACTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTGATTTCGATTCAAGTTCTGAGAGAAGTTACGGATAATTTTAGCGAAAAGAACATATTGGGGAAGGGAGGTTTCGGCACTGTATACAAAGGAGAATTGGCCGATGGAACGAAGATCGCAGTTAAAAGGATGCAATCTGAAATGGGTGGTGACAAAGGGCTGAATGAGTTCAAATCTGAAATCGCAGTTCTTACTAAGGTTCGCCACAGGCATTTGGTCGGACTTCTCGGCTATTGCTTGGAAGACAATGAGAAACTTCTTGTCTATGAATACATGCCTCAGGGGACTCTTAGTCAACATTTGTTTGACTGGAAAGATGATGGTTCAAAACCGCTTGACTGGAAGACAAGGCTCTCTATTGCCTTGGATGTTGCTAGAGGTGTTGAATACCTTCATGGTTTGGCTCAGCATATTTTTATCCACAGGGATCTGAAACCGTCAAACATCTTGCTTGGTGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCTGAAGGACAAGCCTCATTCGAGACTAGACTGGCCGGAACTTTTGGATATCTAGCACCAGAGTACGCAGTCACCGGACGAGTCACCACAAAGGTCGACGTATACAGCTACGGCGTGATTCTTATGGAGATTATAACTGGAAGGAGAGCAATTGACAACAGCCAACCAGAGGAAAATGCGCACCTTGTTACATGGTTCCGCAGGATTCTACTAAACAAAGACTCGTTTGAAAAGGTCATTGATCCAGCAATGGACATCAACGAGGAAGGCTTGGGGAGTTTCAGGGATATTGCAGGGTTGGCGAGCCACTGTTGTGCAAGAGAGCCTAATCAGCGTCCCGAAATGGGACAGATAGTGAATGTGCTAGCACCTCTTGTCGAGATTTGGAACCCGGCCGAACCTGATGACGATGACATGTTTGGGATTGACTTGGATATGAGTTTGCCTCAAGTACTAAGAAAGTGGCAGAACCTTGAAGGAATGAGCAACACACTCGATGTTTCTTCATCGATGAGTGCTAGTTGTGAAAATACACAATCAAGTATACCGCCCCGGTCTCCTCCATTTGTTGATCCCCTTACATCTGCAAATGCGCGATGA 2772 0.4091 MGFGVSYVLHLVVLFSLMFVCAWSQDDGAVMQKLKNKISGVNWSDKDFCNWDTVLCNNGRRVTSIVIPQNLNVHGSLPQELVQLTELTTFQCTGNSLSGNVPYMPNSLQKLSIDSNKFTSMPIDFFNNMTNLIEVRIGYNPFSQWQIPSGLKNCLSLQTFSAVNVSFFGQIPDFFGQENFPSLNFLGLSFNSLEGNLPNSLSSSTSLQTLWVNGQMSKNKLNGTLSVLQSMTSLQQIWVHGNLFTGPIPDFTNFDRLFDVSLRDNQLTGVVPSSLTNLTSLKIVNLTNNNLQGSPPMFPNGVHVDMDLVKGTNSFCTKVVGEPCSPLVNALLSVVQPFGYPLKLVQSWQGNSPCNGSSWEWIGCSGGNVSAIHFQNKSLSGSISPSFASLSSVTELILANNNLTGTIPKELASMPALKLLDVSNNSLYGQIPSFRADVIVKTDMNPDIGKDKPPSSPGSSTGGEDKKKLGVGAIVGIVIGIVGLLGVGVLVFVMYGRRHNKRDGKVQTRNDPSHSRDANAVKISVAASGSAGAVVVGGTGGFSPSTSVQNVEAGNMVISIQVLREVTDNFSEKNILGKGGFGTVYKGELADGTKIAVKRMQSEMGGDKGLNEFKSEIAVLTKVRHRHLVGLLGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLDWKTRLSIALDVARGVEYLHGLAQHIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEIITGRRAIDNSQPEENAHLVTWFRRILLNKDSFEKVIDPAMDINEEGLGSFRDIAGLASHCCAREPNQRPEMGQIVNVLAPLVEIWNPAEPDDDDMFGIDLDMSLPQVLRKWQNLEGMSNTLDVSSSMSASCENTQSSIPPRSPPFVDPLTSANAR 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01253 923 Pfam Protein kinase domain 571 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01253 923 Gene3D Transferase(Phosphotransferase) domain 1 648 861 - -
Trre1g01253 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Trre1g01253 923 Pfam Leucine rich repeat N-terminal domain 25 57 IPR013210 -
Trre1g01253 923 Pfam Leucine rich repeat N-terminal domain 329 365 IPR013210 -
Trre1g01253 923 SUPERFAMILY Protein kinase-like (PK-like) 558 871 IPR011009 -
Trre1g01253 923 SUPERFAMILY L domain-like 329 434 - -
Trre1g01253 923 Gene3D Ribonuclease Inhibitor 27 322 IPR032675 -
Trre1g01253 923 FunFam Receptor-like kinase TMK4 25 321 - -
Trre1g01253 923 ProSitePatterns Protein kinases ATP-binding region signature. 576 598 IPR017441 GO:0005524
Trre1g01253 923 FunFam receptor protein kinase TMK1 648 865 - -
Trre1g01253 923 MobiDBLite consensus disorder prediction 445 465 - -
Trre1g01253 923 ProSiteProfiles Protein kinase domain profile. 570 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01253 923 Gene3D Ribonuclease Inhibitor 327 452 IPR032675 -
Trre1g01253 923 FunFam receptor protein kinase TMK1 538 647 - -
Trre1g01253 923 SMART serkin_6 570 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01253 923 FunFam Leucine-rich repeat receptor-like kinase 326 451 - -
Trre1g01253 923 SUPERFAMILY L domain-like 33 300 - -
Trre1g01253 923 Gene3D Phosphorylase Kinase; domain 1 541 647 - -
Trre1g01253 923 MobiDBLite consensus disorder prediction 892 923 - -
Trre1g01253 923 MobiDBLite consensus disorder prediction 892 908 - -
Trre1g01253 923 PANTHER OSJNBA0070M12.3 PROTEIN 9 923 - -
Trre1g01253 923 CDD STKc_IRAK 576 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01253 Trre-Chr1 9495029 9498351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01253 55 852 Receptor kinase-like Gene Family AT5G07280 31.750 1.13e-89 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre1g01253 Pkinase 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01253 K00924 - gmx:100776064 1145.18