Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01250 ATGTCTCTTCCAATCCTCAATTTCTTCATAACCCTTTTGTTTTTCCTCTCAAATCTTGAACCTTCAATTTCCCAACAACAACAAACACTAAAATCATTCAATATCTCAAACTCACCATGGCTTCCATCACAAAACAAAACATTAATTTCTCCAAATTCCAACTTCAAAGCTGGTTTTTTTCCAATACCAAATTCACAAAATCTCTTCACTTTCTCAATTTGGTATACAAAAATCCCTCAATCTTCAAACCCTCTTATTTGGAGCATCTCAACAAAACTCAACTCATCTTCTTCTCTTGTTATAACCCAAAAAGGTGAACTTTTTCTTAACAATGTTTCATTTGTTAACAATTCCAATTCAACCCAACTTGTTCTTCATGATAATGGAAACCTTGTTTTTGGAAATTGGTCTAGTTTTTCAAATCCAACTAATACCATTTTACCAAACCAAAACATTAGTAACATTGAAATTGTTTCAAATAATCAAAAATTCAGATTTGTTGATGCTCAAAATTTGATTTTGAATGATAATTCATCTGATAATTCATCTAAATACTACAATACACCAAACCCTTTATTGTCTATGGATGATGATGGAAAAATGAGTATGGTAAGTAACTCTTTTCTTACTTCTGATTATGGTGATTCTAGGTTTAGAAAACTTGTTCTTGATGATGATGGAAATTTAAGAATTTATAGTTTTTATCCTGAACAAAAGAATACATGGGTTGTTGTTTGGTTAGGAATTTGGGAAATGTGTAAAGTCAAAGGAAAATGTGGACCTAATTCAATTTGTATGCCAAGAGAAGATTTTTATAATTCAACTTATTGTGTTTGTCCTACTGGATTTGATCCTGTTGAAGGTGGAAGTGAAAAGGGTTGTAAAAGAAAAATTCCGATTTCGAGTAATAGTAATACTCATTTTGTTAGGCTTGATTATGTAAACTATACTAGTGGTTCTATGAATCAAATCTATGCTTTAAACTATACAATTTGTGAGTCGAATTGTACAAGAGATTCGAGTTGTCTTGGATTTGGATTCAAATACGATGGATCGGGTTATTGTGTTTTGTTACGAGGAAAACAGCTTCAATATGGTTATTGGTCGCCGGGGACTGAACTTGCTTTGTTTTTGAGACTTGATCAAAAGGAGTCTGAAGCTTCTAATTTCATCGGTATGACAGAAGTTATGCAAACAACTTGTCCGGTTAGGATAAGTTTGCCTTTGCCGCCGAAGGATTCGAACACTACCACTAGAAATATTGTGATTATTTGCACGCTTTTCGCGGCTGAACTTATTGCTGGTGTGGCGTTCTTTTGGTCTTTTCTTAAGAGGTATATCAAGTATAGGGACATGGCTACCACGTTGGGGCTTGAGCTTTTACCTGCAGGTGGTCCGAAAAGGTTTACCTACTCGGAGATCAAAGCTGCTACTAATGATTTCTCGAATCTTATTGGGAAAGGTGGATTTGGAGATGTTTACAAAGGTGAGTTGCCGGATCACCGTGTTGTTGCGGTGAAGTGCTTAAAGAATGTTACTGGTGGTGATGCGGAATTTTGGGCGGAAGTCACCATCATTGCGAGGATGCATCACTTGAACTTGGTTCGATTATGGGGCTTTTGCGCCGAGAAAGGTCAAAGGATACTTGTTTATGAATACATCTCGGGTGGATCATTAGATAAATATCTCTTCAGAGTCAAATCTAAAAAGGGTAGTGGTGAATCCGAATCTGATATAAGTCACGACACTAGTTCCGATCCAAGTATCTTAGAGAAACCTGTTTTGGATTGGAACATGAGATATAGAATAGCTCTTGGTATGGCAAGGGCTATTGCATATCTACACGAGGAGTGTTTGGAATGGGTTTTGCATTGTGATATAAAACCAGAAAACATTCTCCTAGGTGATGATTGTTGCCCTAAGATATCCGATTTCGGATTGGCGAAACTAAGGAAAAAAGAAGACATGGTGACTATATCAAGAAGGAGAGGAACTCCTGGTTATATGGCACCTGAATGGATAACAGCAGATCCAATAACTTCAAAAGCTGATGTTTATAGTTTTGGTATGGTGCTATTGGAGCTTGTCAGTGGAGTGAGAAACTTTGAGATTCAAGGCTCTGTCGCGAGGAGTGACGAATGGTATTTCCCTGGTTGGGCTTTTGATAAGATGTTTAAGGAAATGAGAGTTGAAGAGATTCTTGATAGTCAAATTTGTCATGCTTATGATAGTAAGGCACATTTTCAGTTGGTTAATAGAATGGTGAAGACTGCAATGTGGTGTTTGCAGGATAGACCTGAATCAAGGCCAACAATGGGGAAGGTGGCTAAGATGATAGAAGGGACTGTTGAGATCATGGATCCTAAGAAACCAACTGTTTTCTTCCTTGGAGAAGAGTAG 2400 0.3692 MSLPILNFFITLLFFLSNLEPSISQQQQTLKSFNISNSPWLPSQNKTLISPNSNFKAGFFPIPNSQNLFTFSIWYTKIPQSSNPLIWSISTKLNSSSSLVITQKGELFLNNVSFVNNSNSTQLVLHDNGNLVFGNWSSFSNPTNTILPNQNISNIEIVSNNQKFRFVDAQNLILNDNSSDNSSKYYNTPNPLLSMDDDGKMSMVSNSFLTSDYGDSRFRKLVLDDDGNLRIYSFYPEQKNTWVVVWLGIWEMCKVKGKCGPNSICMPREDFYNSTYCVCPTGFDPVEGGSEKGCKRKIPISSNSNTHFVRLDYVNYTSGSMNQIYALNYTICESNCTRDSSCLGFGFKYDGSGYCVLLRGKQLQYGYWSPGTELALFLRLDQKESEASNFIGMTEVMQTTCPVRISLPLPPKDSNTTTRNIVIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYISGGSLDKYLFRVKSKKGSGESESDISHDTSSDPSILEKPVLDWNMRYRIALGMARAIAYLHEECLEWVLHCDIKPENILLGDDCCPKISDFGLAKLRKKEDMVTISRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFEIQGSVARSDEWYFPGWAFDKMFKEMRVEEILDSQICHAYDSKAHFQLVNRMVKTAMWCLQDRPESRPTMGKVAKMIEGTVEIMDPKKPTVFFLGEE 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01250 799 SMART serkin_6 479 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01250 799 ProSiteProfiles Protein kinase domain profile. 479 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01250 799 Gene3D Phosphorylase Kinase; domain 1 453 553 - -
Trre1g01250 799 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Trre1g01250 799 Pfam S-locus glycoprotein domain 204 285 IPR000858 GO:0048544
Trre1g01250 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Trre1g01250 799 FunFam S-receptor-like serine/threonine-protein kinase 451 553 - -
Trre1g01250 799 PANTHER OS07G0415500 PROTEIN 8 794 - -
Trre1g01250 799 Pfam Protein kinase domain 483 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01250 799 PIRSF SRK 1 799 IPR024171 GO:0004674
Trre1g01250 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 158 IPR036426 -
Trre1g01250 799 Gene3D - 143 245 IPR036426 -
Trre1g01250 799 Gene3D - 34 142 IPR036426 -
Trre1g01250 799 FunFam Serine/threonine-protein kinase 554 790 - -
Trre1g01250 799 Gene3D Transferase(Phosphotransferase) domain 1 556 790 - -
Trre1g01250 799 ProSiteProfiles PAN/Apple domain profile. 294 381 IPR003609 -
Trre1g01250 799 SUPERFAMILY Protein kinase-like (PK-like) 462 779 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01250 Trre-Chr1 9473672 9476071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01250 467 791 Receptor kinase-like Gene Family AT4G18250 38.855 3.03e-74 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre1g01250 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01250 - - gmx:100775518 1249.19