Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01249 ATGTCTCTTCCAATCCTCAATTTCTTCATAACCCTTTTGTTTTTCCTCTCAAATCTTGAACCTTCAATTTCCCAACAACAACAAACACTAAAATCATTCAATATCTCAAACTCACCATGGCTTCCATCACAAAACAAAACATTAATTTCTCCAAATTCCAACTTCAAAGCTGGTTTTTTTCCAATACCAAATTCACAAAATCTCTTCACTTTCTCAATTTGGTATACAAAAATCCCTCAATCTTCAAACCCTCTTATTTGGAGCATCTCAACAAAACTCAACTCATCTTCTTCTCTTGTTATAACCCAAAAAGGTGAACTTTTTCTTAACAATGTTTCATTTGTTAACAATTCCAATTCAACCCAACTTGTTCTTCATGATAATGGAAACCTTGTTTTTGGAAATTGGTCTAGTTTTTCAAATCCAACTAATACCATTTTACCAAACCAAAACATTAGTAACATTGAAATTGTTTCAAATAATCAAAAATTCAGATTTGTTGATGCTCAAAATTTGATTTTGAATGATAATTCATCTGATAATTCATCTAAATACTACAATACACCAAACCCTTTATTGTCTATGGATGATGATGGAAAAATGAGTATGGTAAGTAACTCTTTTCTTACTTCTGATTATGGTGATTCTAGGTTTAGAAAACTTGTTCTTGATGATGATGGAAATTTAAGAATTTATAGTTTTTATCCTGAACAAAAGAATACATGGGTTGTTGTTTGGTTAGGAATTTGGGAAATGTGTAAAGTCAAAGGAAAATGTGGACCTAATTCAATTTGTATGCCAAGAGAAGATTTTTATAATTCAACTTATTGTGTTTGTCCTACTGGATTTGATCCTGTTGAAGGTGGAAGTGAAAAGGGTTGTAAAAGAAAAATTCCGATTTCGAGTAATAGTAATACTCATTTTGTTAGGCTTGATTATGTAAACTATACTAGTGGTTCTATGAATCAAATCTATGCTTTAAACTATACAATTTGTGAGTCGAATTGTACAAGAGATTCGAGTTGTCTTGGATTTGGATTCAAATACGATGGATCGGGTTATTGTGTTTTGTTACGAGGAAAACAGCTTCAATATGGTTATTGGTCGCCGGGGACTGAACTTGCTTTGTTTTTGAGACTTGATCAAAAGGAGTCTGAAGCTTCTAATTTCATCGGTATGACAGAAGTTATGCAAACAACTTGTCCGGTTAGGATAAGTTTGCCTTTGCCGCCGAAGGATTCGAACACTACCACTAGAAATATTGTGATTATTTGCACGCTTTTCGCGGCTGAACTTATTGCTGGTGTGGCGTTCTTTTGGTCTTTTCTTAAGAGGTATATCAAGTATAGGGACATGGCTACCACGTTGGGGCTTGAGCTTTTACCTGCAGGTGGTCCGAAAAGGTTTACCTACTCGGAGATCAAAGCTGCTACTAATGATTTCTCGAATCTTATTGGGAAAGGTGGATTTGGAGATGTTTACAAAGCAGATCCAATAACTTCAAAAGCTGATGTTTATAGTTTTGGTATGGTGCTATTGGAGCTTGTCAGTGGAGTGAGAAACTTTGAGATTCAAGGCTCTGTCGCGAGGAGTGACGAATGGTATTTCCCTGGTTGGGCTTTTGATAAGATGTTTAAGGAAATGAGAGTTGAAGAGATTCTTGATAGTCAAATTTGTCATGCTTATGATAGTAAGGCACATTTTCAGTTGGTTAATAGAATGGTGAAGACTGCAATGTGGTGTTTGCAGGATAGACCTGAATCAAGGCCAACAATGGGGAAGGTGGCTAAGATGATAGAAGGGACTGTTGAGATCATGGATCCTAAGAAACCAACTGTTTTCTTCCTTGGAGAAGAGTAG 1860 0.3548 MSLPILNFFITLLFFLSNLEPSISQQQQTLKSFNISNSPWLPSQNKTLISPNSNFKAGFFPIPNSQNLFTFSIWYTKIPQSSNPLIWSISTKLNSSSSLVITQKGELFLNNVSFVNNSNSTQLVLHDNGNLVFGNWSSFSNPTNTILPNQNISNIEIVSNNQKFRFVDAQNLILNDNSSDNSSKYYNTPNPLLSMDDDGKMSMVSNSFLTSDYGDSRFRKLVLDDDGNLRIYSFYPEQKNTWVVVWLGIWEMCKVKGKCGPNSICMPREDFYNSTYCVCPTGFDPVEGGSEKGCKRKIPISSNSNTHFVRLDYVNYTSGSMNQIYALNYTICESNCTRDSSCLGFGFKYDGSGYCVLLRGKQLQYGYWSPGTELALFLRLDQKESEASNFIGMTEVMQTTCPVRISLPLPPKDSNTTTRNIVIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKADPITSKADVYSFGMVLLELVSGVRNFEIQGSVARSDEWYFPGWAFDKMFKEMRVEEILDSQICHAYDSKAHFQLVNRMVKTAMWCLQDRPESRPTMGKVAKMIEGTVEIMDPKKPTVFFLGEE 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01249 619 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 158 IPR036426 -
Trre1g01249 619 ProSiteProfiles PAN/Apple domain profile. 294 381 IPR003609 -
Trre1g01249 619 Gene3D Phosphorylase Kinase; domain 1 459 500 - -
Trre1g01249 619 Gene3D - 142 245 IPR036426 -
Trre1g01249 619 PANTHER OS07G0415500 PROTEIN 8 496 - -
Trre1g01249 619 SUPERFAMILY Protein kinase-like (PK-like) 498 599 IPR011009 -
Trre1g01249 619 Gene3D - 34 141 IPR036426 -
Trre1g01249 619 Pfam Protein tyrosine and serine/threonine kinase 496 597 IPR001245 GO:0004672|GO:0006468
Trre1g01249 619 Gene3D Transferase(Phosphotransferase) domain 1 501 613 - -
Trre1g01249 619 Pfam S-locus glycoprotein domain 204 285 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01249 Trre-Chr1 9473672 9476071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01249 499 611 Receptor kinase-like Gene Family AT4G18250 32.174 5.19e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre1g01249 PK_Tyr_Ser-Thr 1.5e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01249 - - gmx:100775518 715.301