Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01233 ATGAATCAATGGAGCCCACCACCACCGCCGCCGCAAAACTCCTCCAATTCACCTACGCAACACATCACCAACCACCGCTCCAATCGCAAAGACACTGTCAAGAAGAGGAGTGAGATGGAAGGTGGAGATCCAACTGCTGCTACAAAAGTTCAGAAGGCCGACCGTGAGAAAATCAGGAGGGATCGGTTGAATGATAGTTTTCATGAATTGGGAACCACTTTAGGGGCTGGTTTTGCAACTTTTCCTGATCTCAAGCTCTGGAGGCGGGAAAGTATCTCTCTAGAAAGACTTTCTTCAAATCATTCCAAGTTGCGACAGAATTCGGCTCAAGATAGTATAACCAATCTTTGGCAGCACCCTGGAGCGAAAATGGAAAGGCTCTGA 384 0.4766 MNQWSPPPPPPQNSSNSPTQHITNHRSNRKDTVKKRSEMEGGDPTAATKVQKADREKIRRDRLNDSFHELGTTLGAGFATFPDLKLWRRESISLERLSSNHSKLRQNSAQDSITNLWQHPGAKMERL 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01233 127 MobiDBLite consensus disorder prediction 24 42 - -
Trre1g01233 127 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 74 IPR036638 GO:0046983
Trre1g01233 127 MobiDBLite consensus disorder prediction 1 15 - -
Trre1g01233 127 Pfam Helix-loop-helix DNA-binding domain 50 75 IPR011598 GO:0046983
Trre1g01233 127 MobiDBLite consensus disorder prediction 1 60 - -
Trre1g01233 127 PANTHER TRANSCRIPTION FACTOR BHLH121 15 75 IPR044579 GO:0003700|GO:0006879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01233 Trre-Chr1 9370673 9379038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01233 13 77 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 41.538 7.21e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g01233 HLH 7.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01233 - - mnt:21409323 61.6178