Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01224 ATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTTATTAAGCCTGTACGGTTGGAAGAACTTAGGAATATATGGCAGCATGTTGCTCGGAAATTTTTGAATGAAAGTAAAGAACATGATAATTCTGGCAGCATTGAAGATAATGATCGCAATAAACGTGGGAATGATGATAACAATAACATTTCTTCTGCTGCTGGTGCAACAAAAGGAATAGTTAAAGAACAAAAAAAGAGAAGCAGTTTAAAAGATGAAGAAGATGTTGAATTGGAGAATGATGATCTATCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTGGAACTGCATCAACAATTTGTCACTGCTGTTAATCAACTAGGGCTTGACAAAGCTGTGCCAAAGAGAATACTTGAATTAATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCGAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAATGGAGTGGTACAGCAACAGAATGGGATGCTAAACACAGTTCCTGGGACTATAGAATCCAAACTAGCTGCTGCTGAAAGATACATACAAACTATGGCTGCTTCTGGCTATGTTTCCCCTGAAACACTTGCAGCCCTTCATGCTGAACTCTTAGGTCACCCGGTAACTAACATAGTGCCTACAGCGGACAGGACTGCACTAATGCAAGCATCTGTACAGGAGCCAAAACACTCTGGTGCTGATGATCGTCCTTCCAACATTGTCAATAATTTCCCTCAGTCCATCTTAAAAGTAGATGATTCATTGTCAGGATATGGAGCATGGTCACCATCTAATACACTCGATTCAAGGGGAAGGTTAGGCATTCAGAATAATAACACGGTGGTTGATATATTGCAGCACCAACAAAAGCACCAGCATCAGCAAATACAACAGCAGTTGCCGATACATGATCAAAATCGATCAATCAATGTTCAACCATCTTGCTTAGTGGTTCCTGCTCAATCTTCTGACACTTTCCAGGAAGTAAAATCTGTTGCTTCTGTCAACAAGGATTGCAGTTTTGGCAGAAATGCCATTGTAGATTATAGTCAACAATCACAAAAATCAAATAATTCATCAAGTACATCTCAATATCTTGGCGGGGACACCAAAGCTACCTCCATTTCTCCTCTAATGTCTTCTTTTTCAGTAGGCTCCAGCAATAACAATATTCAGCAGATTCAAAACTCAACTTCAGCATTTGGTGCTGCGAGACCATTGTCCAGCCTTCTGCCCATGACATTTACACAAGTTCCATATGATATTAAATCCAGCGATTCACTTGATCAAGTTTGTCTTAGGAATCTTGGACTTGTTGGGAAAGGTAACTACATATCAAGTTTTGAAAAGGAAATTGAATCGTCTGCAAGTGATTTTAGTCATATGAAAGTATTTGTAGCTAGCAATGGTAACACAGTGAAGGAGGAGCCAAAGGAGGAACCAAATTTTATCAGATATTCAAATGTGAATCACCCAGTTCTACAGAATTATCCATCTCATGATCATTCAAATGCATCCACTTAA 1635 0.392 MPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRLEELRNIWQHVARKFLNESKEHDNSGSIEDNDRNKRGNDDNNNISSAAGATKGIVKEQKKRSSLKDEEDVELENDDLSTSKKPRVVWSVELHQQFVTAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLNGVVQQQNGMLNTVPGTIESKLAAAERYIQTMAASGYVSPETLAALHAELLGHPVTNIVPTADRTALMQASVQEPKHSGADDRPSNIVNNFPQSILKVDDSLSGYGAWSPSNTLDSRGRLGIQNNNTVVDILQHQQKHQHQQIQQQLPIHDQNRSINVQPSCLVVPAQSSDTFQEVKSVASVNKDCSFGRNAIVDYSQQSQKSNNSSSTSQYLGGDTKATSISPLMSSFSVGSSNNNIQQIQNSTSAFGAARPLSSLLPMTFTQVPYDIKSSDSLDQVCLRNLGLVGKGNYISSFEKEIESSASDFSHMKVFVASNGNTVKEEPKEEPNFIRYSNVNHPVLQNYPSHDHSNAST 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01224 544 FunFam Two-component response regulator 128 191 - -
Trre1g01224 544 Pfam Myb-like DNA-binding domain 134 182 IPR001005 -
Trre1g01224 544 CDD REC_typeB_ARR-like 1 62 - -
Trre1g01224 544 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
Trre1g01224 544 SUPERFAMILY CheY-like 1 67 IPR011006 -
Trre1g01224 544 Gene3D - 128 191 - -
Trre1g01224 544 Pfam Response regulator receiver domain 1 57 IPR001789 GO:0000160
Trre1g01224 544 SUPERFAMILY Homeodomain-like 129 189 IPR009057 -
Trre1g01224 544 MobiDBLite consensus disorder prediction 69 126 - -
Trre1g01224 544 MobiDBLite consensus disorder prediction 69 89 - -
Trre1g01224 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 188 IPR017930 -
Trre1g01224 544 Gene3D - 1 68 - -
Trre1g01224 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 341 IPR045279 GO:0009736
Trre1g01224 544 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 185 IPR006447 GO:0003677
Trre1g01224 544 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01224 Trre-Chr1 9283227 9285188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01224 1 245 Response Regulator Gene Family AT3G16857 50.752 1.57e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre1g01224 Response_reg 9.3e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01224 - K14491 gmx:100817125 640.573