Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01217 ATGTCTACTTCACGAACAACAACCGAAACAGAAACGCAAGACTCACAAGCGCCACTCCTCCGTCCACGTCATGAAGGCGGCGGCCGAGGTACTTCCCTCGCGCTCTTACTCGGACGCGCCGCCGGAAGAAGAGGACCGTCGGTACTTGTACGAGAGACAGCGGCGCGTGAGCTTGAAGAGCGTCGTGCTGACTGGGGATACTCAAAGCCGATTGTCGCGCTTGACATGTCGTGGAATATGGCTTTCGTTGTTGTATCGGCGGTGATGCTGTTTTGCACCTTTGACGAGCATCCGAACACGCCGATCCGTGTTTGGATCATCGGTTACGCGCTTCAGTGTTTCGTTCACGTTGTTCTGGTTTGGCTTGAGTATCACCGCCGTAGTCGGAGGGATTCACGGCGGCGACAGAGAGGTAGCGATCCTGAAATGAGTTCCGATGAATACGACAGTGATGATGGCGACGGGAACTCGTCTCAATCCAGATTTACCAAGCGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGCTGGGCTTTTACTGGATTGTCTCTGCAGATGATATGCTTCTGCAAGATGCTCCACGCTTGTACTGGTTGGCCGTTATCTTTCTGGCATTTGATGTGTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGCTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTATACTTCCAAAATATAGATTTCGATTATTAAACAATGAGGAGAAGGATAATGGTGGAGCTGGATCAATGGTTCCCATAGAAACCACCAGTGCATACTTGGCAAATGAGCGGGTGCTTTTACCTGAGGATGCAGAATGCTGTATATGTCTCTGCACATACGAGGATGGAGTAGAGCTTCACACTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTAAAATGGCTAAAAATGAATGCAACTTGTCCTCTTTGTAAGTACAATATTCTCAAGGGAAACGAACAGGTATGA 1056 0.4811 MSTSRTTTETETQDSQAPLLRPRHEGGGRGTSLALLLGRAAGRRGPSVLVRETAARELEERRADWGYSKPIVALDMSWNMAFVVVSAVMLFCTFDEHPNTPIRVWIIGYALQCFVHVVLVWLEYHRRSRRDSRRRQRGSDPEMSSDEYDSDDGDGNSSQSRFTKRCESINTGVSFLWWMLGFYWIVSADDMLLQDAPRLYWLAVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRLLNNEEKDNGGAGSMVPIETTSAYLANERVLLPEDAECCICLCTYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01217 351 CDD RING-H2_PA-TM-RING 299 341 - -
Trre1g01217 351 FunFam E3 ubiquitin protein ligase RIE1 280 348 - -
Trre1g01217 351 MobiDBLite consensus disorder prediction 133 161 - -
Trre1g01217 351 MobiDBLite consensus disorder prediction 1 17 - -
Trre1g01217 351 Pfam Ring finger domain 299 341 IPR001841 -
Trre1g01217 351 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g01217 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 346 IPR013083 -
Trre1g01217 351 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Trre1g01217 351 SUPERFAMILY RING/U-box 288 345 - -
Trre1g01217 351 PANTHER TARGET OF ERK KINASE MPK-1 40 349 - -
Trre1g01217 351 SMART ring_2 300 340 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01217 Trre-Chr1 9220465 9224555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01217 14 350 C3H Transcription Factor Family AT1G68070 67.751 2.19e-171 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01217 - K13148 aip:107643865 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01217 1 9220465 9224555 Trre1g01217 1 9220465 9224555 ECH