Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01212 ATGGGTTTCGGAGTTTCCTACGTTCATCACCTTGTTGTGCTGTTTTCTGTTATGTTTGTTTGTGCATGGTCTCAAGATGATGATGCTGATGTGATGCAAAAGCTGAAAAATAAAATCAGTGGTGTTAATTGGTCAGACAAAGATTTTTGCAAATGGGATAATGTTCAGTGTAGTAATGGAAGAAGGGTCACTTCAATTGAAATTCCGCAGAATCTCACTGTTCATGGTTCTTTACCACAAGAATTGGTGCAACTCACTGAGTTAACTACTTTTCGTTGCAGTGGTAATAGTTTATCTGGTAATGTTCCTTACATGCCAAATTCCCTTCAGTATTTGTATATTAACAACAACAATTTCAATTCCATGCCAAATGATTTCTTCACCAACATGACTAATTTGATAGTGGTGGGAATTGATTATAACCCTTTTTCTCCATGGCAAATTCCTTCTAGTCTTAAGAATTGTTTAGCCTTGCGAAATTTTACTGCTGTTAATGTTAGTTTTGTTGGTCAAATCCCTGATTTCTTTGGACAAGATACTTTTCAAAACTTGTATTTTTTTAGTCTAAGTTTCAACTCTCTTGAAGGTAATTTGCCTAATAGTTTATCTAGTAGCACAATACAGATTCTTTGGGTGAATGGTCAAATGAGTCAAAATAAACTCAATGGTACACTTTCTGTTTTACAAAGTATGACATCATTGCAACAAATTTGGGTTCATGGCAATTTGTTTACCGGTCCTATACCTGATTTTAAAAATTTCGATCAATTGTTTGATGTTAGTTTGAGGGATAATCAATTGACCGGTGTTGTTCCGTCGTCTTTGACCAACCTTACGAGTTTGAAAATTGTGAATTTGACAAACAATAATCTTCAAGGTTCACCTCCTATGTTTCCAAACGGTGTTCACGTTGATATGGATTTGGTTAAAGGGACTAATAGCTTTTGCACTAAGGTTGTTGGTGAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTCAACCTTTTGGTTATCCTCTTAAACTTGTTCAAAGTTGGCAAGGTAATAGCCCTTGTAATGGCAGTAGTTGGGAATGGATTGGTTGTTCTGGTGGTAATGTTTCTGCTATTCACTTTCAAAACAAGAGTTTATCTGGCAGTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTAACGGAGTTGATTCTTGCTAACAATAATCTCACTGGAACTATACCTAAGGAACTTGCTAGTATGCCGGCTTTGAAATTGCTAGATGTTTCCAATAATTCATTATATGGTCAGATACCGTCGTTTCGCGCAGATGTGATTGTTAAAACTGATATGAATCCTGATATCGGAAAGGATAAACCTCCCAGCTCGCCCGGTTCTAGTACTGGAGGTGAAGATAAGAAGAAACTTGGTGTTGGAGCAATTGTTGGTATTGTGATTGGGATTGTTGGCTTACTTGGTGTAGGGGTTTTGGTATTTATTATGTATGGTAGAAGACATAATAAGCGTGGCGACAATGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCATCTGGAAGTGCTGGTGCTGGCGTTGCAGGAGGAACTGGTGGATTTAGTCCATCGGGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTCATTTCGATTCAAGTTTTGAGAGAAGTGACGGATAATTTTAGCGAAAAGAACATATTGGGGAAGGGAGGTTTCGGCACTGTATACAAAGGAGAATTGGCTGATGGAACGAAGATTGCAGTTAAAAGGATGCAATCCGAAATGGTCGGCGACAAAGGACTGGATGAGTTCAAATCTGAAATTGCGGTTCTTAGTAAGGTTCGACACAGACATTTAGTTGCACTCCACGGTTATTGCTTGGAGGACAATGAGAAACTTCTTGTTTATGAATACATGCCTCAGGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGATGGGTCAAAACCGCTCGAATGTAAGAGAAGGCTCTCCATTGCCTTAGATGTTGCTAGAGGTGTTGAATACCTTCATGGTTTGGCACATCAAATTTTCATCCACAGGGATCTGAAACCATCAAATATCTTGCTTGGGGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGTCTTGCTCCAGAAGGACAGGCCTCATTCCAGACTAGAATTGCTGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTAACCGGAAGAGTCACCACAAAGGTTGACGTATACAGCTTCGGTGTGATTCTTATGGAGATGATAACCGGAAGGAGAGCAATTGACAACAGCCAACCTGAGGAGAACATCCACCTTGTTACATGGTTCCGCAGGATGCTATTGAGCAAAAACTCATTCGAAAAGATCATTGATCCGACAATGGATATCGACGAGGAAGGCTTAAAGAATTTCAAGACTATTGCAGAATTGGCCAGCAATTGCTGTGCTAGAGAGCCTCATCAACGTCCCGACATGGGACACGTAGTGAACGTACTAGCACCTCTTGTCGAGATTTGGAAGCCAGCTGAACCTGATGCCGATGACATGTATGGGATTGACTTCGAAATGAATTTGCCTCAAGCACTAAGGAAGTGGCAGAATCTGGAAGGAATGAGCAGCACACTCGATGTTTCGTATTCTTCGTCGATGGTTGATAGTTGTGAGAACACACAGTCAAGTATACCGCCTCGTGCTCCTGGATTTGCTAATTCCTTTACATCTACTGATGCACGATGA 2790 0.4025 MGFGVSYVHHLVVLFSVMFVCAWSQDDDADVMQKLKNKISGVNWSDKDFCKWDNVQCSNGRRVTSIEIPQNLTVHGSLPQELVQLTELTTFRCSGNSLSGNVPYMPNSLQYLYINNNNFNSMPNDFFTNMTNLIVVGIDYNPFSPWQIPSSLKNCLALRNFTAVNVSFVGQIPDFFGQDTFQNLYFFSLSFNSLEGNLPNSLSSSTIQILWVNGQMSQNKLNGTLSVLQSMTSLQQIWVHGNLFTGPIPDFKNFDQLFDVSLRDNQLTGVVPSSLTNLTSLKIVNLTNNNLQGSPPMFPNGVHVDMDLVKGTNSFCTKVVGEPCSPLVNALLSVVQPFGYPLKLVQSWQGNSPCNGSSWEWIGCSGGNVSAIHFQNKSLSGSISPSFASLSSVTELILANNNLTGTIPKELASMPALKLLDVSNNSLYGQIPSFRADVIVKTDMNPDIGKDKPPSSPGSSTGGEDKKKLGVGAIVGIVIGIVGLLGVGVLVFIMYGRRHNKRGDNVQTPNAIVVHPRHSGDGNAVKISVAASGSAGAGVAGGTGGFSPSGSVQNVEAGNMVISIQVLREVTDNFSEKNILGKGGFGTVYKGELADGTKIAVKRMQSEMVGDKGLDEFKSEIAVLSKVRHRHLVALHGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLECKRRLSIALDVARGVEYLHGLAHQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFQTRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMITGRRAIDNSQPEENIHLVTWFRRMLLSKNSFEKIIDPTMDIDEEGLKNFKTIAELASNCCAREPHQRPDMGHVVNVLAPLVEIWKPAEPDADDMYGIDFEMNLPQALRKWQNLEGMSSTLDVSYSSSMVDSCENTQSSIPPRAPGFANSFTSTDAR 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01212 929 PANTHER OSJNBA0070M12.3 PROTEIN 9 929 - -
Trre1g01212 929 Gene3D Ribonuclease Inhibitor 327 452 IPR032675 -
Trre1g01212 929 MobiDBLite consensus disorder prediction 445 465 - -
Trre1g01212 929 FunFam receptor protein kinase TMK1 652 869 - -
Trre1g01212 929 Gene3D Transferase(Phosphotransferase) domain 1 652 865 - -
Trre1g01212 929 FunFam receptor protein kinase TMK1 540 651 - -
Trre1g01212 929 MobiDBLite consensus disorder prediction 906 929 - -
Trre1g01212 929 ProSiteProfiles Protein kinase domain profile. 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01212 929 SMART serkin_6 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01212 929 SUPERFAMILY Protein kinase-like (PK-like) 562 880 IPR011009 -
Trre1g01212 929 FunFam Leucine-rich repeat receptor-like kinase 326 451 - -
Trre1g01212 929 Pfam Protein kinase domain 575 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01212 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Trre1g01212 929 SUPERFAMILY L domain-like 57 432 - -
Trre1g01212 929 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Trre1g01212 929 FunFam Receptor-like kinase TMK4 26 321 - -
Trre1g01212 929 CDD STKc_IRAK 580 853 - -
Trre1g01212 929 Gene3D Ribonuclease Inhibitor 26 322 IPR032675 -
Trre1g01212 929 Gene3D Phosphorylase Kinase; domain 1 547 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01212 Trre-Chr1 9165462 9168749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01212 76 856 Receptor kinase-like Gene Family AT5G07280 31.303 4.63e-81 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre1g01212 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01212 K00924 - gmx:100776064 1211.82