Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01204 ATGATGCAGGGAAGTGGAGGATTAACAGTTACTTCAGGATTCAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTTTTATCTAAGGAGGAAAGTTTCTTATGAGAAGTTGATCTCAATAGACATGAGCCTTGGGATCTCAAAGGTTTTCATCTGGACTGGCTGCAACTCTACTATTATGGCCAGTAATAATGGAACAGATTCACCTATCGCACAAAGGTAA 222 0.4099 MMQGSGGLTVTSGFRFHPTDEELLYFYLRRKVSYEKLISIDMSLGISKVFIWTGCNSTIMASNNGTDSPIAQR 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01204 73 Pfam No apical meristem (NAM) protein 12 37 IPR003441 GO:0003677|GO:0006355
Trre1g01204 73 SUPERFAMILY NAC domain 7 38 IPR036093 GO:0003677|GO:0006355
Trre1g01204 73 ProSiteProfiles NAC domain profile. 10 73 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01204 Trre-Chr1 9132894 9133833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01204 4 37 NAC Transcription Factor Family AT1G79580 67.647 6.07e-12 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g01204 NAM 7.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01204 - - gmx:100789606 64.3142