Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01192 ATGGAAAGAGATTTCATGGGTCTATCCTCAAAAGAATCTTTGCCTATTGCAAAACAAGAGATTAACAATGAAGGCTTCAAAGACTTAGGAGGTTTTACAAAAGTTTCGGCAGTAAAATGGCCGTTCATGAACAAAGTTTCTGGTCATCCATATTTGATGCCTTTTAATGTTTCCGAAGAAGATAAGGCTAAAATGACATCTTCTGGTTTCATAGAGAAATCTTTCAAACATGATGGACAAGTTTCCAATCAAGCAATTTCAGTTTCTGCGGGACATTCGTTCCTAAAGAATCATTATGCAACTTTTGGTCAGAACATGAATGGCGCTAATGTGAAGCAACCACTACTCGGGGGATTCTCTGTTACAAAACCTCATCCAGTTCTTCCAATCGGTGGTACCGTTGCTGGTTTGACTGAACCATGTGTGAAACCATCTGCACCTGCTTCTCAACTTACCATGTTCTATGCCGGTACTGTGAACATCTTCAATGATATCACTCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTAGAAGTGGCATATCTGCAGCTTCAAACATGGTTCAATCTGAAGTTCCGATACCTAGTTCAAAGTTCGCGTCGGGTGATGATGGTGTGCCTATGAGTCCACCTGTAAATATACCACCTTCCTCTGGTATTTCTAGTCCTTTATCTGTTTCTTCACACACCGGTCCACAGTCAGGGAGTGGCTCAAGTAGCAGTGATGAATTTCTTGCTGCTAAAACATCTAGAGGTCCTACTCCTACCACTTCTGCTAGCAAAGTGGAGACTCCAAAAGTAGTCAATGCAACCACCATGTTTACGTCAGCTATACCGCAAGCCCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAGAGGGTGATGAGTGCAGCACCATATAACCTCAACAACAAGAAATCCGAGGATGCTCCAATGCCAAATTCAATGATTGCAGCGAAGCAAGGATAA 978 0.4274 MERDFMGLSSKESLPIAKQEINNEGFKDLGGFTKVSAVKWPFMNKVSGHPYLMPFNVSEEDKAKMTSSGFIEKSFKHDGQVSNQAISVSAGHSFLKNHYATFGQNMNGANVKQPLLGGFSVTKPHPVLPIGGTVAGLTEPCVKPSAPASQLTMFYAGTVNIFNDITPEKAQAIMLLARSGISAASNMVQSEVPIPSSKFASGDDGVPMSPPVNIPPSSGISSPLSVSSHTGPQSGSGSSSSDEFLAAKTSRGPTPTTSASKVETPKVVNATTMFTSAIPQARKASLARFLEKRKERVMSAAPYNLNNKKSEDAPMPNSMIAAKQG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01192 325 SMART tify_2 144 179 IPR010399 -
Trre1g01192 325 ProSiteProfiles Tify domain profile. 144 179 IPR010399 -
Trre1g01192 325 MobiDBLite consensus disorder prediction 195 263 - -
Trre1g01192 325 MobiDBLite consensus disorder prediction 218 263 - -
Trre1g01192 325 Pfam Jas motif 279 303 IPR018467 -
Trre1g01192 325 Pfam tify domain 146 177 IPR010399 -
Trre1g01192 325 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 85 312 IPR040390 -
Trre1g01192 325 MobiDBLite consensus disorder prediction 301 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01192 Trre-Chr1 9048641 9052165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01192 94 313 Tify Gene Family AT3G17860 39.056 6.52e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre1g01192 tify 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01192 K13464 - gmx:100799314 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01192 1 9048641 9052165 Trre1g01192 1 9048641 9052165 ECH