Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01191 ATGCCGCCAAAGCTCGATCCATCTCAGGTCGTCGAGGTTTACGTCCGAGTCACCGGAGGTGAAGTCGGAGCCGCGAGTTCACTCGCTCCAAAGATCGGTCCACTCGGTCTTTCTCCAAAAAAGATCGGAGAAGACATCGCCAAAGAAACCGCTAAAGATTGGAAGGGTCTTAGGGTTACCGTCAAGCTCACCGTTCAGAATCGTCAGGCTAAGGTCTCCGTTGTTCCTTCTGCGGCGGCGCTTGTTATCAAGGCTTTGAAGGAACCTGAACGTGATCGGAAAAAGGTGATGAAGCCAAGGTCTATGGCGAAGGAACTTGCTGGTACCGTGAAGGAGATTCTTGGAACTTGTGTTTCAGTTGGTTGCACTGTTGATGGAAAGGATCCCAAGGATTTGCAGCAGGAGATTAACGATGGTGATGTTGAAATCCCTCAGGATTGA 441 0.5034 MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVMKPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEIPQD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01191 146 PANTHER 60S RIBOSOMAL PROTEIN L12 1 131 IPR000911 GO:0003735|GO:0005840|GO:0006412
Trre1g01191 146 MobiDBLite consensus disorder prediction 126 146 - -
Trre1g01191 146 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Trre1g01191 146 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 129 IPR036769 -
Trre1g01191 146 ProSitePatterns Ribosomal protein L11 signature. 111 126 IPR020785 GO:0003735|GO:0005840|GO:0006412
Trre1g01191 146 FunFam 60S ribosomal protein L12 1 81 - -
Trre1g01191 146 Gene3D - 1 86 IPR036796 -
Trre1g01191 146 Gene3D - 95 144 IPR036769 -
Trre1g01191 146 FunFam Uncharacterized protein 110 144 - -
Trre1g01191 146 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Trre1g01191 146 SMART rl11c 13 125 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01191 Trre-Chr1 9039850 9040350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01191 1 146 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 79.518 3.25e-90 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01191 K02870 - twl:119984749 270.781