Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01184 ATGAGCAAATCCAACAATTTCTTTCATAATCTCATAAAGCCCTTCAAATTTGGTTCAACCAGAGAGGGAAATAGTGAGGACGATATACAGAACTTAGCTACACAAGAGCAGAGGACATTTTCCTATGAAACATTGGTTGCTGCTACCAATAACTTCAATGTTCATAACAAGCTTGGTGAGGGAGGCTTTGGACCTGTTTACAAGGGTAAATTGAATGATGGGAGAGAGATAGCAGTGAAGAAGTTATCACTTGGTTCAAATCAAGGGAAGACACAGTTTGTTGCGGAGGCCAAGTTGTTGACTCGCGTGCAGCACCGTAATGTGGTGAATTTATATGGTTATTGCATTCATGGCAGAGAGAAGCTTCTTGTGTATGAGTATATCTCTCGTGAGAGCCTTGACAAGTTCCTATTCAGATCAAACAAGAAACATGAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGATTACTTTATCTTCATGAAGACTCTCACAACTGCATAATTCATCGTGACATAAAAGCAGCCAACATTTTACTTGATGAAAAATGGGTCCCTAAGATTGCTGACTTTGGCTTGGCTCGTCTCTTCCCCGAAGATGAAACTCATGTCAATACACGTGTGGCTGGAACACATGGATACATGGCTCCGGAGTACTTGATGCATGGACATCTCTCTGTGAAGGCAGACGTGTATAGCTATGGAGTTTTGGTGTTGGAGTTGATCACCGGTCATCGAAATTCCTCCTCTGATTCAGCCTTCAACGGAGACAATCTCCTTAATTGGGCATACAAGCTATACAAGAAAGGGAAGTGGGTAGAAATGGTGGACCCAACAGTAGTATCTTCTGTGACAGTAACAGAACAAGTGGAGACATGCATTCGAGTGAGTCTGCTATGCATACAAGGTGATCCGCAACTTCGTCCAACGATGGGACGTGTGGTGTTGATGTTGTCAAAGAAACCACCAAGTCACATGGAAGAACCAACGAGACCAGGCGTACCCGGTTCCAGATACAAAAGAAGACTGCCTCGTAGTCGTACACCTTTCACTACTGATGATGAAAATGACTCATCTGCTTCACATATTGATACTAGCAACTTTGACACTACTACTACTACCACCAATTCCAATTCTTCTGCTACAAGAACGAGTTCTGCTACTGCACAAGTAGACACGAAAGGGAAGCGTCCGATGCTACATTGA 1221 0.43 MSKSNNFFHNLIKPFKFGSTREGNSEDDIQNLATQEQRTFSYETLVAATNNFNVHNKLGEGGFGPVYKGKLNDGREIAVKKLSLGSNQGKTQFVAEAKLLTRVQHRNVVNLYGYCIHGREKLLVYEYISRESLDKFLFRSNKKHELDWKRRFDIINGVARGLLYLHEDSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDSAFNGDNLLNWAYKLYKKGKWVEMVDPTVVSSVTVTEQVETCIRVSLLCIQGDPQLRPTMGRVVLMLSKKPPSHMEEPTRPGVPGSRYKRRLPRSRTPFTTDDENDSSASHIDTSNFDTTTTTTNSNSSATRTSSATAQVDTKGKRPMLH 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01184 406 CDD STKc_IRAK 58 325 - -
Trre1g01184 406 Pfam Protein kinase domain 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01184 406 SMART serkin_6 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01184 406 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Trre1g01184 406 MobiDBLite consensus disorder prediction 351 365 - -
Trre1g01184 406 FunFam Cysteine-rich receptor-like protein kinase 2 128 331 - -
Trre1g01184 406 ProSiteProfiles Protein kinase domain profile. 52 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01184 406 SUPERFAMILY Protein kinase-like (PK-like) 36 342 IPR011009 -
Trre1g01184 406 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Trre1g01184 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Trre1g01184 406 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Trre1g01184 406 MobiDBLite consensus disorder prediction 325 406 - -
Trre1g01184 406 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 380 - -
Trre1g01184 406 MobiDBLite consensus disorder prediction 366 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01184 Trre-Chr1 8988711 8992240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01184 20 338 Receptor kinase-like Gene Family AT4G11530 49.691 1.96e-105 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g01184 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01184 - - mtr:11421623 721.85