Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01183 ATGTTGGCGACAACAATCTCAATCCTAACACCTTCTTCCAACCTTAACCCAACTCATTTCTTGCCTTCAACAACAACAGCAACAACCAGACTCACACTCCCACCCTCTTCTTCAAAATCATACTCCAAACTCCGTCTTCTTGCCAGGCTCAGTCATAGTATCAATAGTAATGGTGGTGGTCCTGATCGTGCCGTTGGTCCTACCTCACCCGAAATTGATGAAATAGAAAGCCAAACATCTTCTGGCTTTGGTGATAGCTATGTGGGATTGTTTGTTCGTATGCTAGGCCTAGATCACGGTCCACCTGATAGAGAACAAGCTATAATTACTCTTTGGCAATATTCACTTGGTGGAAAAAAATGTATTGACAATATAATGCAATATCCTGGTTGTATTAATCTTGTTGTCAACCTCCTTAGATCGGAGTCTAGTACGTCCTGCGAGGCAGCTGCAGGCCTTCTGCGTTCGGTATCTTCAATCGACCTATATAGAGATTCTGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTGACACAATCTGACTTGGCCCTTGAGGTAACGGTGCAGAGTCTGAATATACTGTGGAATTTATCTTTTGATGGGAAGCTCCGTGTTAAACTTGCAAAGAGCGATATTCATTTGTTAGCTATTAAGTACCTTGATGATGAAGATAAGATAGTGAAAGAAGCTGCAGCTGGTGTTTTGGCAAATTTGGCATTGAGCCAAGTTAACCACGGCATAATGGTTGAAGCAGGTGTTATCCCGAAACTGGCAAAGTTCTTAACGTCTGACTCAGAAGAATCTCCAGTCATTAGAAAGGAAGCAAGGAATGCATTGCTGGAACTTGCGAAGGACGATTATTACAGAATTCTTGTTATCGAGGAAGGTTTAGTTCCTGTTCCATTAATAGGTGCTGCAGCCTATAAGTCTTACACTCCACATAAATATGAGCCGCTTGCATTTCCAGATGGTACAGAAATTGAAAAGACTTATAACAAACCTTCTAAATATGGTGCATCAGAATTTCTTTTTGGATTAAATGTCGATAATAATGCTAACATAGATGAAGCAAAAGTCAATGCAATTATCGGTCAGACACAACAGCAATTCCTTGTTAGTATCGGTGCTATAGAAAGGGAAGAAACAGAACCTCGTTCTGAAAGTTCAGATAATCAACAGCGTCTTACACTTTTACATTGGATCGACGGTGTTGCTCGTTTAGTACTGATACTAGAACTAGAAGACATGTCAGCAATAATAAGAGCTGCAGAGTCGATTGCTAGTGCATGTATCAACGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCAGTTAATCATTTACTGCGGCTTTTGTCTTCCGAAGATAATGCAGTCCAGCTGGCAGCAACTCAAGCTTTGGAAAAGCTGGCTGTTAGCAATGTTGTTTGTCGTGTAATTGAAGCTGAGGGTGGTTTAAGTCCTTTAGTTAGTATTTTAAAATGCTCAGACATATCCGGAGCTATTGCAGAAAAGTCTTTAAACATACTTGCTCAGATATTAGATCCTAATAAAGCGATGCAATTGAAGTTTTATGATGGACCAGTTAATGGATCTGAAAAAGCATTTGGTGGAGACAACAATGATGGTTCAACGGGATTAAGTAGCACTGACCAAGCCGTATCGGAAACAAAGCCAAGGAATGATATACTGGACTCGGTTTTCACTGCACGCCTTGTTGAGCTTTTAAAGTGCTCTTCACCCAGTTTACAAGAAAAGGCTGCATCTGTTATGGAGTTTGTTGCATTGGCGGACCCAACACTGACTCCAATTATATCCGTGGATATTGAAAATGGTCTCAATTCTGCTTTTCAGCAAAATTTATTGAAAATTTCAGCAGACACAGAATCTGATGTGGAAGATCAGTTTTCACCAGCATATGCTATTAAATTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCTCGGTTATTGACAAGACTACTTGACTCTAAGCAGTTTTGCGACAAATTAAATTTCTCCCGTTTCATTGACACACTCCGCGAAATCCTCAAGTCCAATATTCCCCTACACAGCAAAGATTGGGTAGCTGCTTGTCTAGTTAAACTAAGTTCTCTCTCTGATTACGACACGAGTTCTAATCCAATCAATGTGGAAGTTACACTTTACGAGAAAATTCCAAGACTTGTAGACCAGATTAAAACTTCATTCTCATTAGAAGCACAGGAAAATGCTGTTGTAGAACTTAATAGAATAGTATCTGAAGGGGTGGTAGATTCCACAGCAGCTATTATTTCTGAAGGAGCGGTATATCCTTTGGTGAAACTGATTGAAGAAGGTAGTGCAAGAGGCGTTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGACAGTGAGAACCATGCAGCACTTGTAGCTGCTGGAGCAGTTCCAGCTTTAAAAAGAATTGTTCTGTCAGAAAAACCACACTGGCAAAAGGCACTTCATTTGCTCAGGAGTTTGCAAACATGA 2523 0.4043 MLATTISILTPSSNLNPTHFLPSTTTATTRLTLPPSSSKSYSKLRLLARLSHSINSNGGGPDRAVGPTSPEIDEIESQTSSGFGDSYVGLFVRMLGLDHGPPDREQAIITLWQYSLGGKKCIDNIMQYPGCINLVVNLLRSESSTSCEAAAGLLRSVSSIDLYRDSVADSGAIEEINRLLTQSDLALEVTVQSLNILWNLSFDGKLRVKLAKSDIHLLAIKYLDDEDKIVKEAAAGVLANLALSQVNHGIMVEAGVIPKLAKFLTSDSEESPVIRKEARNALLELAKDDYYRILVIEEGLVPVPLIGAAAYKSYTPHKYEPLAFPDGTEIEKTYNKPSKYGASEFLFGLNVDNNANIDEAKVNAIIGQTQQQFLVSIGAIEREETEPRSESSDNQQRLTLLHWIDGVARLVLILELEDMSAIIRAAESIASACINEHMRIAFKEAGAVNHLLRLLSSEDNAVQLAATQALEKLAVSNVVCRVIEAEGGLSPLVSILKCSDISGAIAEKSLNILAQILDPNKAMQLKFYDGPVNGSEKAFGGDNNDGSTGLSSTDQAVSETKPRNDILDSVFTARLVELLKCSSPSLQEKAASVMEFVALADPTLTPIISVDIENGLNSAFQQNLLKISADTESDVEDQFSPAYAIKFEEAGLAISAASRLLTRLLDSKQFCDKLNFSRFIDTLREILKSNIPLHSKDWVAACLVKLSSLSDYDTSSNPINVEVTLYEKIPRLVDQIKTSFSLEAQENAVVELNRIVSEGVVDSTAAIISEGAVYPLVKLIEEGSARGVEASLTILYNLSMDSENHAALVAAGAVPALKRIVLSEKPHWQKALHLLRSLQT 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01183 840 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 171 201 IPR000225 GO:0005515
Trre1g01183 840 MobiDBLite consensus disorder prediction 540 561 - -
Trre1g01183 840 MobiDBLite consensus disorder prediction 537 561 - -
Trre1g01183 840 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 50 840 - -
Trre1g01183 840 Gene3D - 85 312 IPR011989 -
Trre1g01183 840 Pfam Armadillo/beta-catenin-like repeat 435 474 IPR000225 GO:0005515
Trre1g01183 840 Gene3D - 379 642 IPR011989 -
Trre1g01183 840 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 771 813 IPR000225 GO:0005515
Trre1g01183 840 SUPERFAMILY ARM repeat 392 828 IPR016024 -
Trre1g01183 840 Gene3D - 643 839 IPR011989 -
Trre1g01183 840 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 446 488 IPR000225 GO:0005515
Trre1g01183 840 SMART arm_5 760 800 IPR000225 GO:0005515
Trre1g01183 840 SMART arm_5 244 287 IPR000225 GO:0005515
Trre1g01183 840 SMART arm_5 435 475 IPR000225 GO:0005515
Trre1g01183 840 SMART arm_5 801 840 IPR000225 GO:0005515
Trre1g01183 840 SMART arm_5 160 202 IPR000225 GO:0005515
Trre1g01183 840 SMART arm_5 558 599 IPR000225 GO:0005515
Trre1g01183 840 SMART arm_5 476 518 IPR000225 GO:0005515
Trre1g01183 840 SUPERFAMILY ARM repeat 91 306 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01183 Trre-Chr1 8981185 8986833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01183 729 821 U-box Gene Family AT2G28830 38.298 8.32e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01183 - - gmx:100793128 1075.46