Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01177 ATGGATAGTCATAATAATATTCTTGGCCTTCTTAAACTTAGAATTAAAAGAGGTATTAATCTTGCAATTCGTGATGCTAAGGCCAGCGATCCTTATGTTGTTGTCAACATGGCTGAACAGAAGTTGAAAACTCGTGTAGTAAAAAACAATTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCGGTAAGGGACGTTAAAACTCCTATACATCTGACAGTTTTCGACAAAGATACTTTCTCCGTAGACGACAAAATGGGCGATGCAGATGTAGACTTGAAACCATATGCACAATGTGTACAAATGAAGTTGGACAAACTTCCAAATGGTTGTGCAGTCAAGAGGATTCAAGCAAATAGGACTAACTGCCTTGCTGAAGAGAGCAGTTGTATTTATAAAAACGGAAAAATCATCCAAGAAATGATTCTACGATTGAGAAATGTCGAGAGCGGGGAATTGGTTGTCGAAATCGAGTGGGTTGATGTTCCGGGTTGCAGAGGTCTATTAGGGGCACAAGTTTAA 522 0.3927 MDSHNNILGLLKLRIKRGINLAIRDAKASDPYVVVNMAEQKLKTRVVKNNCNPEWNEELTLSVRDVKTPIHLTVFDKDTFSVDDKMGDADVDLKPYAQCVQMKLDKLPNGCAVKRIQANRTNCLAEESSCIYKNGKIIQEMILRLRNVESGELVVEIEWVDVPGCRGLLGAQV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01177 173 SMART C2_3c 10 105 IPR000008 -
Trre1g01177 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 160 IPR035892 -
Trre1g01177 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 6 165 IPR044562 -
Trre1g01177 173 CDD C2_ArfGAP 8 151 - -
Trre1g01177 173 Gene3D C2 domain 4 165 IPR035892 -
Trre1g01177 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Trre1g01177 173 Pfam C2 domain 10 95 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01177 Trre-Chr1 8938170 8939344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01177 41 168 C2H2 Transcription Factor Family AT1G70790 67.692 6.05e-63 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01177 - - gmx:100788395 293.123