Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01174 ATGACAACAACTTCCATTTCATTACACACTTTAGCAGTGAACCAAACGATCCGAGATGGTGGTGGTGAGAGTTTAGTTTCAGTAAGTGGGATCACTGAATTCGGTTTCTTCAGCCCCGGGAGTTCAAAAGGTCGATATTTGGGTGTATGGTACAGGAATGTAACCCCTTTAACAGTCATATGGGTGGCCAATAGAGAAACACCACTAAAAAACCATTTAGGAGTGTTAAAGCTCAATGCAAACGGGATTTTTCAGCTTCGCAACGGCCCTGCTAACAGCGCTATAATTTGGTCATCCAATACAACTACAATAAGAAAAGCAGGGAATCTGAATAATCCTATAGCTCAGCTCCTGGATTCAGGAAATTTGGTAGTGAAAAATGGAGAGCAAACTGATGAATTTTTGTGGCAGAGTTTTGATTATCCCTCTGATACATTGATGTCCGGAATGAAACTTGGATGGAACTTAGAAATTGGTCTAGAAAGATCCACATCATCATGGAAAAGTGATGATGACCCTGCTGAGGGAGAATATGCTATGAAACTTGACCTTAGAGGATATCCTCAGATAATTATATTCAAAGGATCTGATATATATAATAGACCAGGGCCATGGCTCGGCGAGTTCATTGCTGGATCTCAAGAACCAACTCCGGGAGCGGAGCAGAGATTTGTGTTCAATGAAAAAGAAGTGTATTATGAATACGAGAGTAATGAAAGCTCAACTATCGCGTTAACTAAACTGGCTCCTTCAGGTGCTGAGCAGATTCTGTATTGGGTTGTTGGAACGGGCAAAAGGCTAGTGTACTCAGATGGGAAGGATGAATGCGAAGACTACGCCTATTGTGGTACAAATTCTATATGCAGCATGGATGGTAGCCTTCCAAATTGTGAGTGTTTGAAAGGGTATGTTCCGAAAATTCCTCAACAGTGGGAGCTGTCTCACTGGAAAGACGGTTGTGTTCCGAGGAATGAATCTAATTGCAAAAGCAGTACAGAGGGGTTCTTCAAGTACACACACATGAAGTATCCAGATACATCTTCATCATGGTTTGATAAGAGCACGAACCTCGTGGAATGTAAGGCGATGTGTCTCAGAAACTGTTCCTGTGTAGCCTATGCTAATTTAGATACCCGCAATGGCGGAACTGGGTGTCTTCTTTGGTTTAATTATCTGGTTGATGTGAGAGAATTCACTAAATGGGGACAAGATATTTATGTCAAAGTCCCTCTTTCAGAACTAGATGTAGATAACCATGGAAACATCAAGAAGATAGTCGGAATCACAGTTGCTGTGATTATTATTATTGGATTAATTACATGTGGATCGATATGTATGATTAAAAATCGTCCAGGGGCTGCAAGAAATACTTTCAGTTTCAACAAGCGTTACGAAAGAAACCTAAGGAAGGAAGAAGATGTTGACCTGACAACATTCGATTTCTCTGTCTTGGCTTATGCCACTAACAACTTTTCAAGCAGTAACAAACTTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGAATGTTGATAGATGGACAAGAGATAGCTGTGAAAAGACTTTCGAAAAGATCTGGACAAGGCTTGAAAGAATTTAAAAATGAAGTGGCACTGATTGCAAAACTTCAGCACCGTAATCTCATAAAGCTTCTTGGCTGTTGTATTCAAGGAGAAGAAACAATGTTGATCTATGAATACATGCCGAACAAAAGCTTGGACTATTTTGTTTTTGATGACACCAAAACGATGTCACTGGATTGGGTTAGGCGTTTCAATATTATTGGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGAGTGAGGATTATTCACAGAGATCTAAAAACTAGCAATATATTACTAGACATAAATTTGGAGCCGAAAATATCAGACTTTGGCTTGGCTCGAATCTTTTTGGGGGACCAAATCGAGGAAAACACAAATAGAGTGGCTGGAACTTATGGCTACATATCTCCAGAGTATGCTGTCCATGGGCATTTCTCAGCGAAATCAGATGTATTTAGTTATGGTGTGATTGTACTAGAGATTGTAAGTGGGAAAAGGAATAGGGGATTTTCAAACCTCGAACAGTGCAATAATCTTCTTGGATATGCATGGAGATTATGGTCGGAAGAGAGAGCCCTGGAACTATTGGATGAAGTGTTACGGGAACAATATACAGCATTTGAAGTCATACGAAGTATACAGGTGGGCTTGTTATGTGTGCAACAAAGCCCAGAAGATAGACCAGACATGTCATCTGTGGTTCTAATGCTAAATGGTCAGAAAATATTGCCAGAGCCAACGTTTCCTGGCTTTTACGCGGAAAAAGATTTACGTACCGAATCAGGTTCTTCACTTGCAACTCACAAATTCTGCTCAACTAATGAAATATCCATTACAGAGTTAGATGCGAGATAG 2430 0.4041 MTTTSISLHTLAVNQTIRDGGGESLVSVSGITEFGFFSPGSSKGRYLGVWYRNVTPLTVIWVANRETPLKNHLGVLKLNANGIFQLRNGPANSAIIWSSNTTTIRKAGNLNNPIAQLLDSGNLVVKNGEQTDEFLWQSFDYPSDTLMSGMKLGWNLEIGLERSTSSWKSDDDPAEGEYAMKLDLRGYPQIIIFKGSDIYNRPGPWLGEFIAGSQEPTPGAEQRFVFNEKEVYYEYESNESSTIALTKLAPSGAEQILYWVVGTGKRLVYSDGKDECEDYAYCGTNSICSMDGSLPNCECLKGYVPKIPQQWELSHWKDGCVPRNESNCKSSTEGFFKYTHMKYPDTSSSWFDKSTNLVECKAMCLRNCSCVAYANLDTRNGGTGCLLWFNYLVDVREFTKWGQDIYVKVPLSELDVDNHGNIKKIVGITVAVIIIIGLITCGSICMIKNRPGAARNTFSFNKRYERNLRKEEDVDLTTFDFSVLAYATNNFSSSNKLGEGGFGPVYKGMLIDGQEIAVKRLSKRSGQGLKEFKNEVALIAKLQHRNLIKLLGCCIQGEETMLIYEYMPNKSLDYFVFDDTKTMSLDWVRRFNIIGGIARGLLYLHQDSRVRIIHRDLKTSNILLDINLEPKISDFGLARIFLGDQIEENTNRVAGTYGYISPEYAVHGHFSAKSDVFSYGVIVLEIVSGKRNRGFSNLEQCNNLLGYAWRLWSEERALELLDEVLREQYTAFEVIRSIQVGLLCVQQSPEDRPDMSSVVLMLNGQKILPEPTFPGFYAEKDLRTESGSSLATHKFCSTNEISITELDAR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01174 809 ProSiteProfiles EGF-like domain profile. 272 309 IPR000742 -
Trre1g01174 809 CDD STKc_IRAK 497 764 - -
Trre1g01174 809 Gene3D Hepatocyte Growth Factor 326 407 - -
Trre1g01174 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 567 770 - -
Trre1g01174 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Trre1g01174 809 SMART ntp_6 330 409 IPR003609 -
Trre1g01174 809 Gene3D Phosphorylase Kinase; domain 1 465 566 - -
Trre1g01174 809 Pfam D-mannose binding lectin 58 168 IPR001480 -
Trre1g01174 809 Pfam S-locus glycoprotein domain 201 306 IPR000858 GO:0048544
Trre1g01174 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 455 566 - -
Trre1g01174 809 CDD B_lectin 20 142 IPR001480 -
Trre1g01174 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 327 409 - -
Trre1g01174 809 SMART blect_4 16 142 IPR001480 -
Trre1g01174 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 173 IPR036426 -
Trre1g01174 809 ProSiteProfiles Bulb-type lectin domain profile. 10 138 IPR001480 -
Trre1g01174 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 3 139 - -
Trre1g01174 809 ProSiteProfiles PAN/Apple domain profile. 328 410 IPR003609 -
Trre1g01174 809 PIRSF SRK 1 809 IPR024171 GO:0004674
Trre1g01174 809 CDD PAN_AP_plant 326 410 - -
Trre1g01174 809 Pfam Protein tyrosine and serine/threonine kinase 494 760 IPR001245 GO:0004672|GO:0006468
Trre1g01174 809 Pfam PAN-like domain 328 395 IPR003609 -
Trre1g01174 809 SUPERFAMILY Protein kinase-like (PK-like) 474 770 IPR011009 -
Trre1g01174 809 Gene3D Transferase(Phosphotransferase) domain 1 567 768 - -
Trre1g01174 809 Gene3D - 5 139 IPR036426 -
Trre1g01174 809 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 753 - -
Trre1g01174 809 ProSiteProfiles Protein kinase domain profile. 491 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01174 809 SMART serkin_6 491 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01174 Trre-Chr1 8917344 8920446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01174 425 777 Receptor kinase-like Gene Family AT4G23190 53.315 1.03e-129 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g01174 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01174 - - gmx:100815430 1051.2